BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942456
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family pro... 1118 0.0
> AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family protein
| chr5:10647570-10649892 REVERSE LENGTH=1166
Length=1166
Score = 1118 bits (605), Expect = 0.0
Identities = 651/673 (97%), Gaps = 3/673 (0%)
Strand=Plus/Plus
Query 1 TATATAAAATAGCAAAAGAAATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TATATAAAATAGCAAAAGAAATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCTG 312
Query 61 GTTACTACCCCAGCAATGTTACCTCTGATCATATCCAACAGTACTTGGACGAGAACAAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 313 GTTACTACCCCAGCAATGTTACCTCTGATCATATCCAACAGTACTTGGACGAAAACAAAT 372
Query 121 CGTTGATTCTGAAGATTGTTGAGTCTCAAAACTCAGGAAAGCTTAGCGAGTGCGCCGAGA 180
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 373 CGTTGATTCTGAAGATTGTTGAGTCTCAAAACTCTGGAAAGCTTAGCGAATGCGCCGAGA 432
Query 181 ATCAGGCAAGACTTCAACGCAACCTAATGTACTTAGCTGCAATAGCAGATTCTCAGCCTC 240
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 433 ATCAAGCAAGGCTTCAACGCAACCTAATGTACCTAGCTGCAATAGCAGATTCTCAGCCTC 492
Query 241 AGCCTCCAAGTGTGCATAGCCAGTATGGATCTGCTGGTGGTGGGATGATTCAGGGAGAAG 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AGCCACCAAGTGTGCATAGCCAGTATGGATCTGCTGGTGGTGGGATGATTCAGGGAGAAG 552
Query 301 GAGGGTCACACTATTTGCAGCAGCAACAAGCGACTCAGCAGCAACAGATGACTCAACAGT 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 553 GAGGGTCACACTATTTGCAGCAGCAACAAGCGACTCAACAGCAACAGATGACTCAGCAGT 612
Query 361 CTCTAATGGCGGCTCGATCCTCAATGTTGTATGCTCAGCAGCAGCAGCA--A-CAGCCTT 417
||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||
Sbjct 613 CTCTAATGGCGGCTCGATCTTCAATGTTGTATGCTCAGCAACAGCAGCAGCAGCAGCCTT 672
Query 418 ACGCAACGCTTCAGCATCAGCAATTGCACCATAGCCAGCTTGGAATGAGCTCGAGCAGCG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ACGCGACGCTTCAGCATCAGCAATTGCACCATAGCCAGCTTGGAATGAGCTCGAGCAGCG 732
Query 478 GAGGAGGAGGAAGCAGTGGTCTCCATATCCTTCAAGGAGAGGCTGGGGGGTTTCATGATT 537
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 733 GAGGAGGAGGAAGCAGTGGTCTCCATATCCTTCAGGGAGAGGCTGGTGGGTTTCATGATT 792
Query 538 TTGGCCGTGGGAAGCCCGAAATGGGAAGTGGTGGTGGCGGTGAAGGCAGAGGAGGAAGTT 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTGGCCGTGGGAAGCCGGAAATGGGAAGTGGTGGTGGCGGTGAAGGCAGAGGAGGAAGTT 852
Query 598 CAGGTGATGGTGGCGAAACCCTTTACTTGAAATCATCAGATGATGGGAATTAAAAGAGTG 657
|||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 853 CAGGGGATGGTGGAGAAACCCTTTACTTGAAATCATCAGATGATGGGAATTGAAAGAGTG 912
Query 658 AGGCACAAGGAAT 670
||||||||||||
Sbjct 913 TGGCACAAGGAAT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5