BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942467

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32930.1 | Symbols:  | Galactosyltransferase family protein ...   294    3e-79
  AT1G11730.1 | Symbols:  | Galactosyltransferase family protein ...  82.4    3e-15


> AT1G32930.1 | Symbols:  | Galactosyltransferase family protein 
| chr1:11931842-11934759 REVERSE LENGTH=1698
Length=1698

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 186/199 (93%), Gaps = 2/199 (1%)
 Strand=Plus/Plus

Query  47    AGTTCTTCTCATGGAGGAGTCTTGGACCACACCATTGAAGCTAAAGAACAACAACACAAT  106
             |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| 
Sbjct  892   AGTTCTTCTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACACAAA  951

Query  107   GACTTC-TTCTGTCTGAATAAGAGAGAAGGTTATCATGAATTATCATCGAAAACTCAAAT  165
             |||||| ||| | |||||| | | |||||||||||||||||||||||| ||||| |||||
Sbjct  952   GACTTCTTTC-GACTGAATCACATAGAAGGTTATCATGAATTATCATCTAAAACCCAAAT  1010

Query  166   ATATTTCTCATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGA  225
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1011  ATACTTCTCATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGA  1070

Query  226   TGTTCACGTAAATCTCGGA  244
             |||||||||||||||||||
Sbjct  1071  TGTTCACGTAAATCTCGGA  1089


 Score =  159 bits (86),  Expect = 1e-38
 Identities = 99/105 (94%), Gaps = 2/105 (2%)
 Strand=Plus/Plus

Query  242   GGAGTCAAATACCATGAGCCAGAGTATTGGAAGTTTGGTGAAGAAGGAAACAAGA-ACTT  300
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct  1177  GGAGTCAAATACCATGAGCCAGAATATTGGAAGTTTGGTGAAGAAGGAAACAA-ATACTT  1235

Query  301   CAGACACGCAACTGGACAAATCTAAGCCATCTCCAAAGATTTAGC  345
             |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct  1236  CAGACATGCAACTGGACAAATCTATGCAATCTCCAAAGATTTAGC  1280


> AT1G11730.1 | Symbols:  | Galactosyltransferase family protein 
| chr1:3957473-3960113 FORWARD LENGTH=1155
Length=1155

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 78/95 (82%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  251  TACCATGAGCCAGAGTATTGGAAGTTTGGTGAAGAAGGAAACAAGAACTTCAGACACGCA  310
            ||||||||||||||||||||||||||||| ||||  || |||||| | ||| | ||||| 
Sbjct  781  TACCATGAGCCAGAGTATTGGAAGTTTGGAGAAGTCGGGAACAAGTATTTCCGCCACGCC  840

Query  311  ACTGGACAAATCTAAGCCATCTCCAAAGATTTAGC  345
            ||||||||  | || || || || |||||| ||||
Sbjct  841  ACTGGACAGTTTTATGCTATATCTAAAGATCTAGC  875



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5