BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942475

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00030.1 | Symbols: ORF107A | hypothetical protein | chrM:11...  76.8    9e-14


> ATMG00030.1 | Symbols: ORF107A | hypothetical protein | chrM:11918-12241 
FORWARD LENGTH=324
Length=324

 Score = 76.8 bits (41),  Expect = 9e-14
 Identities = 41/41 (100%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  10   GATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGC  50
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  72   GATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGC  112



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12617204999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5