BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942505

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein ...   211    5e-54
  AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |...   196    1e-49


> AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein 
| chr3:865183-867008 REVERSE LENGTH=929
Length=929

 Score =  211 bits (114),  Expect = 5e-54
 Identities = 122/126 (97%), Gaps = 0/126 (0%)
 Strand=Plus/Plus

Query  103  TCAGAACCTAGCTGACAAGAGGGTGATTTTCTGCGATGAGACACTGAAGCTAATCTTTGA  162
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  642  TCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTGA  701

Query  163  AGGGAAAGACAAAGTTGGGTTTTTGGAGATTTCAAAACTCTTGTCCCCGTACTTTGTGAA  222
            |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  702  AGGGAAAGACAAAGTTGGGTTTCTGGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGAA  761

Query  223  GACTGC  228
            ||||||
Sbjct  762  GACTGC  767


> AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 
| chr5:26157863-26161096 FORWARD LENGTH=2196
Length=2196

 Score =  196 bits (106),  Expect = 1e-49
 Identities = 110/112 (98%), Gaps = 0/112 (0%)
 Strand=Plus/Plus

Query  227   GCAAGGGGAGGAGAATCTCCTCTTTCACCTATCAAGATCTTATCAATATTACAAAAGATT  286
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1150  GCAAGGGGAGGAGAATCTCCTCTTTCACCTATCAAGATCTTATCAAAATTACAAAAGATT  1209

Query  287   GGGAAGCATCTTGGCCCTGGAAAAGAAGAAGACGCACACGAGTTTTTAAGGT  338
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1210  GGGAAGCATCTTGGCCCTGGAAAAGAAGAAGACGCGCACGAGTTTTTAAGGT  1261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5