BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942506

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04485.1 | Symbols:  | other RNA | chr3:1198114-1200104 FORW...   132    2e-30


> AT3G04485.1 | Symbols:  | other RNA | chr3:1198114-1200104 FORWARD 
LENGTH=878
Length=878

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 127/153 (83%), Gaps = 7/153 (5%)
 Strand=Plus/Plus

Query  49   ATTCAAATCATTTTATG-TCACCTGAAGCTCTCTTTCTCCATTCA-CTTGGTTGCCCAAA  106
            |||||||||| || ||| | ||||||||||||||||||||||| | ||| ||||||||||
Sbjct  74   ATTCAAATCACTTAATGCT-ACCTGAAGCTCTCTTTCTCCATT-AGCTTCGTTGCCCAAA  131

Query  107  TCCTCTTGGCCTCACTCAT-T-CAC-TTCGTTACCGGAGCACACTCGAGTTACCATGTTG  163
            |||| ||| ||| |||||| | |   ||||||||||||||||  ||||| ||| |   ||
Sbjct  132  TCCTGTTGACCTGACTCATCTTCTGGTTCGTTACCGGAGCACGGTCGAGGTACTACCATG  191

Query  164  TGAACTACAGTTGAATAATGTAGCAGCCATCAA  196
            ||| ||| | ||||||||||||| |||||||||
Sbjct  192  TGAGCTAGATTTGAATAATGTAGAAGCCATCAA  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5