BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942511

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083...   152    2e-36


> AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083926-5086640 
REVERSE LENGTH=2715
Length=2715

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 103/113 (91%), Gaps = 2/113 (2%)
 Strand=Plus/Plus

Query  46    CTCGAATTGCAAACTTGGAGAGGCTGGTAAT-GTATTGGAAAGAGAGTGATCCTGCCTTT  104
             |||| || ||||||||||||| ||| || || |||||||||| ||||||||||||| |||
Sbjct  2262  CTCGGATCGCAAACTTGGAGATGCTTGT-ATCGTATTGGAAACAGAGTGATCCTGCGTTT  2320

Query  105   GCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACCAGCCACCACAGCAGC  157
             |||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct  2321  GCAGCTTTTGTTGCATCTCAGCCACATCCAACTGCACCAGCCACCACACCAGC  2373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5