BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942513

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |...   573    7e-163
  AT2G38980.1 | Symbols:  | pseudogene, similar to fiber protein ...  82.4    5e-15 
  AT2G43830.1 | Symbols:  | pseudogene, NPK1-related protein kina...  82.4    5e-15 
  AT2G44280.1 | Symbols:  | Major facilitator superfamily protein...  54.7    1e-06 


> AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 
| chr5:26157863-26161096 FORWARD LENGTH=2196
Length=2196

 Score =  573 bits (310),  Expect = 7e-163
 Identities = 453/517 (88%), Gaps = 29/517 (6%)
 Strand=Plus/Plus

Query  120   TGTTATGCAGATGTTGTCCTTCAGTGCTTGGCATTCACTCGGCTACTAATATCATACCTT  179
             ||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  1012  TGTTATGCAAATGCTGTCCTTCAGTGCTTGGCATTCACTCGGCCACTGATATCATACCTT  1071

Query  180   ATTAGGGGATTACACTCTAAAACATGTa-aaaaaaCGAGTTGGTGTTTTGTATGTGAGTT  238
             |||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||||
Sbjct  1072  ATTAGGGGATTACACTCTAAAACATGTAGAAAGAA-GAGTTGGTGTTTTGTTTGTGAGTT  1130

Query  239   TGAACACTTAATTTTAAAGGCAAGGGGAGGAGAATCTCCTCTTTCACCTATCAAGATCTT  298
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1131  TGAACACTTAATTTTAAAGGCAAGGGGAGGAGAATCTCCTCTTTCACCTATCAAGATCTT  1190

Query  299   ATCTAAATTACAAAAGATTGGGAATAATCTTAGCCCTGGAAAACAAGAAAAAGCACACGA  358
             ||| ||||||||||||||||||||  ||||| ||||||||||| ||||| | || |||||
Sbjct  1191  ATCAAAATTACAAAAGATTGGGAAGCATCTTGGCCCTGGAAAAGAAGAAGACGCGCACGA  1250

Query  359   GTTTTTAAGGTATGCTGTTGAGACAATGCAATATGTTTTTCTCAAAGAGGCTCATGCAGC  418
             ||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct  1251  GTTTTTAAGGTGTGCTGTTGATACAATGCAATCTGTTTTTCTCAAAGAGGCTCCTGCAGC  1310

Query  419   TGGTCCGTTTGCTGAAGAAACTACTTTA-----C-----GTTTGGTGGATATCTTCACTC  468
             ||||||||||||||||||||||||||||     |     |||||||||||||||||||||
Sbjct  1311  TGGTCCGTTTGCTGAAGAAACTACTTTAGTAGGCCTTACGTTTGGTGGATATCTTCACTC  1370

Query  469   CAAGGCAGCAACAGTTTCTTGGCTT---TAAGATTAAATGCCTCCA-CAAATCTGAGCTG  524
             ||||  |  || | |  | |||| |   |   |  |||| | |  | | |  | ||||||
Sbjct  1371  CAAG--ATTAA-A-TG-CATGGCATGCCTCC-AC-AAAT-C-TG-AGCGAC-CGGAGCTG  1419

Query  525   ATGATGGATCTCAGTGTAGAGATTGATGGGGATATAGGAAGCCTCGAAGAAGCACTTGCT  584
             ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1420  ATGATGGATCTAACTGTTGAGATTGATGGGGATATAGGAAGCCTCGAAGAAGCACTTGCT  1479

Query  585   CAAGTT-ATAGCCTACGAAGTCCTAGATGGAGAGAAC  620
             ||| || | ||| ||||||||||||||||||||||||
Sbjct  1480  CAA-TTCACAGCATACGAAGTCCTAGATGGAGAGAAC  1515


> AT2G38980.1 | Symbols:  | pseudogene, similar to fiber protein 
Fb12,  blastp match of 53% identity and 1.2e-13 P-value to 
GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium 
barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346
Length=2346

 Score = 82.4 bits (44),  Expect = 5e-15
 Identities = 61/68 (90%), Gaps = 6/68 (9%)
 Strand=Plus/Plus

Query  70    TGCCATTATCCCATTCATGTTTCTGTTTTCTTG-AGCAGATGAGCTTCTGCTGTTATGCA  128
             ||||||||||||||||||||||||||||||||| | ||||||||||||| | || ||| |
Sbjct  1352  TGCCATTATCCCATTCATGTTTCTGTTTTCTTGTA-CAGATGAGCTTCT-C-GT-ATG-A  1406

Query  129   GATGTTGT  136
             | ||||||
Sbjct  1407  GTTGTTGT  1414


> AT2G43830.1 | Symbols:  | pseudogene, NPK1-related protein kinase 
3, identical to NPK1-related protein kinase 3 (GI:2342427) 
(Arabidopsis thaliana);; blastp match of 91% identity and 
2.1e-09 P-value to GP|456309|dbj|BAA05648.1||D26601 protein 
kinase {Nicotiana tabacum} | chr2:18154542-18156488 REVERSE 
LENGTH=1947
Length=1947

 Score = 82.4 bits (44),  Expect = 5e-15
 Identities = 61/68 (90%), Gaps = 6/68 (9%)
 Strand=Plus/Plus

Query  70   TGCCATTATCCCATTCATGTTTCTGTTTTCTTG-AGCAGATGAGCTTCTGCTGTTATGCA  128
            ||||||||||||||||||||||||||||||||| | ||||||||||||| | || ||| |
Sbjct  932  TGCCATTATCCCATTCATGTTTCTGTTTTCTTGTA-CAGATGAGCTTCT-C-GT-ATG-A  986

Query  129  GATGTTGT  136
            | ||||||
Sbjct  987  GTTGTTGT  994


> AT2G44280.1 | Symbols:  | Major facilitator superfamily protein 
| chr2:18301350-18304284 REVERSE LENGTH=1959
Length=1959

 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  33   GATCCATCGACAAAACCACTTGGAAGATT  61
            |||||||||||||||||||||||||||||
Sbjct  400  GATCCATCGACAAAACCACTTGGAAGATT  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31145171140


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5