BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942514
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |... 318 3e-86
> AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17
| chr5:26157863-26161096 FORWARD LENGTH=2196
Length=2196
Score = 318 bits (172), Expect = 3e-86
Identities = 214/235 (91%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 1 AGAAGGCCAAAAAGAAATTAATGATATTGGAAGGACCCGATTTTCTTACTGTCGTGTTGA 60
|||| |||||||||||||| |||||||||||||||||| || |||||||||||||| |||
Sbjct 1547 AGAAAGCCAAAAAGAAATTGATGATATTGGAAGGACCCAATATTCTTACTGTCGTGCTGA 1606
Query 61 AATGTTTTCAGTCGGATAACTTTGGGAAGCTGAGCAAACCCATCTATTTTCCCGAGCTTC 120
|| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1607 AACGTTTTCAGTCTGATAACTTTGGGAAGCTGAGCAAACCCATCCATTTTCCCGAGCTTC 1666
Query 121 TCGATATTTTCCCGTATATGAGTGATACAAATCATAGTGATCATCCCGTGTATAGCCTCT 180
|||||||| ||||||||||||||| |||||||| | |||||||| || ||||| ||||
Sbjct 1667 TCGATATTAGCCCGTATATGAGTGACCCAAATCATGGGGATCATCCGGTTTATAGTCTCT 1726
Query 181 ATGCAGTGGTAGTCCATTTGGATGCTATGAACACTTCATTTTCAGGTCATTATGT 235
| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1727 ACGCAGTGGTGGTCCATTTGGATGCTATGAGCACTTTATTTTCAGGTCATTATGT 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5