BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942533
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07390.1 | Symbols: | Mannose-P-dolichol utilization defect... 1171 0.0
> AT4G07390.1 | Symbols: | Mannose-P-dolichol utilization defect
1 protein | chr4:4195680-4197571 FORWARD LENGTH=1032
Length=1032
Score = 1171 bits (634), Expect = 0.0
Identities = 713/751 (95%), Gaps = 5/751 (1%)
Strand=Plus/Plus
Query 1 AAGATCCAAGCGCAAAATCAATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGAT 60
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAGAT-CAA-CTCAAAATCAATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGAT 110
Query 61 CTCTCCGGAACGGTGAGTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CTCTCCGGAACGGTGACTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTC 170
Query 121 TCGGTTATTGCCTCGTCGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCG 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCGGTTATTGCCTCGTTGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCG 230
Query 181 TGCAACATAAGAGTGTGCGAGGCTTAAGTGTTATGGCATTTGAGCTTGAAGTGGTTGGTT 240
| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 231 TTCAACATAAGAGTGTACGAGGCTTAAGTGTTGTGGCATTTGAGCTTGAAGTTGTTGGTT 290
Query 241 ACACAATTTCACTTGCTTATTGTTTGCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ACACAATTTCACTTGCTTATTGTTTGCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAA 350
Query 301 TGGCTTTTCTTTTGATTCAAGCTTTAATCTTGGTTGCTTGTATCTATTATTATTCTCAAC 360
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 351 TGGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTATTCACAAC 410
Query 361 CAGTACCTGTAACAACTTGGATCAGACCACTTCTATATTGTGCTGTGGCACCAACTGTGC 420
|||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 411 CAGTACCTGTCACAACTTGGATTAGACCACTTCTATATTGCGCTGTGGCGCCAACTGTGC 470
Query 421 TTGCTGGACAGATAAATCCTACGCTTTTCGAAGCTCTTTATGCTTCACAACATGCGATAT 480
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TTGCTGGACAGATTAATCCGACGCTTTTCGAAGCTCTTTATGCTTCACAACATGCGATAT 530
Query 481 TTCTCTTTGCAAGACTCCCTCAGATATGGAAGAACTTCAAAAACAAAAGCACCGGAGAAC 540
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 531 TTCTCTTTGCAAGACTCCCTCAGATATGGAAGAACTTTAAAAACAAAAGCACTGGAGAAC 590
Query 541 TTAGTTTCTTAACTTTCTTCATGAACTTTGCCGGTTCGATAGTGAGAGTTTTCACCAGCC 600
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 591 TTAGTTTCTTAACTTTCTTCATGAACTTTGCCGGGTCAATAGTGAGAGTTTTCACCAGCT 650
Query 601 TCCAGGAAAAGGCTCCACTAAGCATTCTTACCGGTTTTGCTCTTGGAGTCGTCACCAACG 660
| |||||||| |||||| | ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 651 TACAGGAAAAAGCTCCAATTAGCATTCTTACGGGTTTCGCTCTTGGAGTCGTCACCAACG 710
Query 661 GAAGCATCCTGACGCAGATTCTCTTGTATTCTAAGCCTGCTGCAGCAAAGGAGAAGAAAA 720
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 711 GAAGCATCCTGACGCAGATTCTCTTGTACTCGAAGCCTGCTGCTGCAAAGGAGAAGAAAG 770
Query 721 CTAATTGAT---TAGAAAGATGTCCTAAATC 748
| ||||||| ||||||||| |||||||||
Sbjct 771 CCAATTGATAGGTAGAAAGATATCCTAAATC 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5