BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942548 Length=639 Score E Sequences producing significant alignments: (Bits) Value ATMG00640.1 | Symbols: ORF25 | hydrogen ion transporting ATP sy... 1020 0.0 > ATMG00640.1 | Symbols: ORF25 | hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 REVERSE LENGTH=579 Length=579 Score = 1020 bits (552), Expect = 0.0 Identities = 571/580 (98%), Gaps = 2/580 (0%) Strand=Plus/Plus Query 21 ATGAGATTGAGT-TCGACGAATATGGATGCTAGAAAGATGTTATTTGCTGCTATTCTATC 79 |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGAGATTGAGTAT-TACGAATATGGATGGTAGAAAGATGTTATTTGCTGCTATTCTATC 59 Query 80 TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT 119 Query 140 TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC 179 Query 200 TCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA 259 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCTCGACGGGAGCCTCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA 239 Query 260 AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG 299 Query 320 TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT 359 Query 380 GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC 419 Query 440 TTCCCGTCGCATCCGTTTTCAGGACGATCGAGTCACAAAGTTTTACACCTTAGTGGGGAA 499 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 420 TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA 479 Query 500 TCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT 539 Query 560 GGTGGTCTTAAGAATGGTTCggggggggggTTTCTCTTAA 599 ||||||||||||||||||||||||||||| |||||||||| Sbjct 540 GGTGGTCTTAAGAATGGTTCGGGGGGGGGTTTTCTCTTAA 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30843766258 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5