BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942548

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00640.1 | Symbols: ORF25 | hydrogen ion transporting ATP sy...  1020    0.0  


> ATMG00640.1 | Symbols: ORF25 | hydrogen ion transporting ATP 
synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 
REVERSE LENGTH=579
Length=579

 Score = 1020 bits (552),  Expect = 0.0
 Identities = 571/580 (98%), Gaps = 2/580 (0%)
 Strand=Plus/Plus

Query  21   ATGAGATTGAGT-TCGACGAATATGGATGCTAGAAAGATGTTATTTGCTGCTATTCTATC  79
            |||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGAGATTGAGTAT-TACGAATATGGATGGTAGAAAGATGTTATTTGCTGCTATTCTATC  59

Query  80   TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  119

Query  140  TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  179

Query  200  TCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  259
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TCTCGACGGGAGCCTCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  239

Query  260  AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  299

Query  320  TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT  359

Query  380  GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  419

Query  440  TTCCCGTCGCATCCGTTTTCAGGACGATCGAGTCACAAAGTTTTACACCTTAGTGGGGAA  499
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  420  TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA  479

Query  500  TCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  559
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  539

Query  560  GGTGGTCTTAAGAATGGTTCggggggggggTTTCTCTTAA  599
            ||||||||||||||||||||||||||||| ||||||||||
Sbjct  540  GGTGGTCTTAAGAATGGTTCGGGGGGGGGTTTTCTCTTAA  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30843766258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5