BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942549

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00650.1 | Symbols: NAD4L | NADH dehydrogenase subunit 4L | ...   560    5e-159


> ATMG00650.1 | Symbols: NAD4L | NADH dehydrogenase subunit 4L 
| chrM:188929-189231 REVERSE LENGTH=303
Length=303

 Score =  560 bits (303),  Expect = 5e-159
 Identities = 303/303 (100%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  263  ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  60

Query  323  ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  120

Query  383  GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  180

Query  443  TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  240

Query  503  GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  300

Query  563  TAA  565
            |||
Sbjct  301  TAA  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28131122320


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5