BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942551

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG01200.1 | Symbols: ORF294 | hypothetical protein | chrM:303...   374    3e-103
  AT2G07698.1 | Symbols:  | ATPase, F1 complex, alpha subunit pro...   374    3e-103


> ATMG01200.1 | Symbols: ORF294 | hypothetical protein | chrM:303836-304720 
REVERSE LENGTH=885
Length=885

 Score =  374 bits (202),  Expect = 3e-103
 Identities = 214/220 (97%), Gaps = 0/220 (0%)
 Strand=Plus/Plus

Query  1    ATCTGCAACGGATCCAGGAAATGCAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTG  60
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  596  ATCTACAACGGATCCAGGAAATGGAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTG  655

Query  61   GGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCACAAGCTGGAGGGAAAAGTGGCGC  120
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  656  GGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCGCGAGCTGGAGGGAAAAGTGGCGC  715

Query  121  GCAATCGCGCCTTGGATATGGTACGAGATGCTCAACTCAACATATGGAGGCAGGGGCTTG  180
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  716  GCAATCGCGCCTGGGATATGGTACGAGATGCTCAACTCGACATATGGAGGCAGGGGCTTG  775

Query  181  ATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCT  220
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  776  ATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCT  815


> AT2G07698.1 | Symbols:  | ATPase, F1 complex, alpha subunit protein 
| chr2:3361474-3364127 FORWARD LENGTH=2433
Length=2433

 Score =  374 bits (202),  Expect = 3e-103
 Identities = 214/220 (97%), Gaps = 0/220 (0%)
 Strand=Plus/Plus

Query  1    ATCTGCAACGGATCCAGGAAATGCAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTG  60
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  596  ATCTACAACGGATCCAGGAAATGGAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTG  655

Query  61   GGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCACAAGCTGGAGGGAAAAGTGGCGC  120
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  656  GGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCGCGAGCTGGAGGGAAAAGTGGCGC  715

Query  121  GCAATCGCGCCTTGGATATGGTACGAGATGCTCAACTCAACATATGGAGGCAGGGGCTTG  180
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  716  GCAATCGCGCCTGGGATATGGTACGAGATGCTCAACTCGACATATGGAGGCAGGGGCTTG  775

Query  181  ATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCT  220
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  776  ATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCT  815



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5