BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942554
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09060.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 874 0.0
> AT4G09060.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G14680.1).
| chr4:5797659-5800330 REVERSE LENGTH=1303
Length=1303
Score = 874 bits (473), Expect = 0.0
Identities = 514/534 (96%), Gaps = 2/534 (0%)
Strand=Plus/Plus
Query 1 TCTTGTTTCAAGAGTAAACCATGCTGAGCGAGAGAATTGATTCAGGTGAAGCAGAAACGA 60
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 58 TCTTGTTTCAAGAGTAAACCATGCGGAGCGAGAGAATTGATTCAGATGAAGCAGAAAC-A 116
Query 61 GAA-CAAGAACAAATCTCTCGCAAGAAGTCGAAGAATATATCAAAGACACAATTGATCAC 119
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 117 AAATCGAGAACAAATCTCTCGCAAGAAGTCGAAGAATATATCAAAGATACAATTGATCAT 176
Query 120 TCGTTAGGTCTTCCGATCTCTATGGAAGCTCTTCAGAAGAAGCTTTATACGGCTGAAGAA 179
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 177 TCTTTAGGTCTTCCGATCTCCATGGAATCTCTTCAGAAGAAGCTTTATACGGCTGAAGAA 236
Query 180 TCTCAACGCCGTCTTCGCGAACAGTATCTGGCTTTGGTTTCGCGATTAAAGGAGAAAGAT 239
|||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct 237 TCTCAACGCCGTCTTCGCGAACAGTATCAGGGTCTGATTTCGCGATTAAAGGAGAAAGAT 296
Query 240 CATGTAATCGATCGTGTTAGGTCTGAAGCGAGTATGAATGCGCAAGCCTTGAAGAAGTTT 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 297 CATGTAATCGATCGTGTTAGGTCTGAAGCGAGTATGAATGCGCAAGCGTTGAAGAAGTTT 356
Query 300 GTTGATGAGAATCAGAAATTGGCTAGTGAGTGTGGGAATTTGTTGAGTCAGTGTAAGAAA 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTGAAGAGAATCAGAAATTGGCTAGTGAGTGTGGGAATTTGTTGAGTCAGTGTAAGAAA 416
Query 360 TTGGAGAAAGAGTGTTTGCTTTATCATCAAGATCGTGATGCGTTGATGGAGTTTGGGAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTGGAGAAAGAGTGTTTGCTTTATCATCAAGATCGTGATGCGTTGATGGAGTTTGGGAAT 476
Query 420 GAATCTGATGAGAGAGCTAGAGAAGCAGAAGCTAGGGTTCGTGAATTGGAGGATGAAATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAATCTGATGAGAGAGCTAGAGAAGCAGAAGCTAGGGTTCGTGAATTGGAGGATGAAATT 536
Query 480 GGAAGAATGTCTGAGGAAATGCAGATTTTTAAGCGTCAAATTGGAGATGGTGAA 533
||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 537 GGAAGAATGTCTGAGGAAATGCAGAGATTTAAGCGTCAAATCGGAGATGGTGAA 590
Score = 835 bits (452), Expect = 0.0
Identities = 510/537 (95%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 533 AGTTGAAAACTGCACTACACCGTTAGAAGAAGATTTGCTTGATTCAGTTGTGGGATCACT 592
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 668 AGTTGAAAACTGTACTACACCGTTAGAAGAAGATTTGCTTGATTCAGTTTTGGGATCACT 727
Query 593 CATAAGCAAAGATGAAACTATAATGGGACGTCTCTTCTTGGAGGCAAACATCCAAGACCA 652
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 728 CATAAGCAAAGATGAAACTATAATGGGGCGTCTCTTCTTGGAGGCAAACATCCACGACCA 787
Query 653 ATCGTGCCAAGCCTTGTTGAGCAAGTGGGATCATTTAAAGCCTTCAATGCAAAAGGTTCT 712
|||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 788 ATCGTGCCAAGCCTTGCTGAGCAAGTGGGATCACTTAAAGCCTTCAACGCAAAAGGTTCT 847
Query 713 TTCTTTAGTTTC-AAGAGCAAAGAAATTTGAAAAGGAAAAAGAATGCATCATCATGAATC 771
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 848 TTCTTTAGTTTCAAAG-GCAAAGAAATTCGAAAAGGAAAAAGAATGCATCATCATGAATC 906
Query 772 TCGCTAAAGCCGAGCAAGAGGTGGAACTTGTGAGCACCCTAAACCGAAAGCTGGATAAAG 831
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 907 TCGCTAAAGCTGAGCAAGAGGTGGAACTTGTGAGCACGCTAAACCGAAAGCTGGATAAAG 966
Query 832 AAAATCGTAAGTTGCTAAGGCAACAACAACAAAGTCCTCTTTGTTCCGCAGACAGGAACC 891
|||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||
Sbjct 967 AAAATCGTAAGTTGCTAAGG---CAACAACAAAGCCCTCTTTGCTCCGCAGACAAGAACC 1023
Query 892 GAAACAGCGCATCTGCGAAGTCAAACAAGAGAAAGAGTCCGAAGACGATGAGTAGCCCGG 951
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GAAACAGCGCATCTGCAAAGTCAAACAAGAGAAAGAGTCCGAAGACGATGAGTAGCCCGG 1083
Query 952 TCGAGAAGAGGCTTGAGTTTAGCAGTCCAGAAATCAGCAGGAAGCCTCTATCACCTGTGT 1011
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1084 TCGAGAAGAGGCTTGAGTTTAGCAGTCCAGAAATTAGCAGGAAGCCTCTATCACCTGTAT 1143
Query 1012 GGAATAACTCACCAGATTCTATGATGAACAAGATTTGATGATGAA-AATAATCAAAC 1067
||||||||||||||||||||| ||||||||| | |||||||| || || ||||||||
Sbjct 1144 GGAATAACTCACCAGATTCTAAGATGAACAACAATTGATGATAAACAA-AATCAAAC 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5