BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942556
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09030.1 | Symbols: AGP10, ATAGP10 | arabinogalactan protein... 606 4e-173
> AT4G09030.1 | Symbols: AGP10, ATAGP10 | arabinogalactan protein
10 | chr4:5792207-5792790 FORWARD LENGTH=584
Length=584
Score = 606 bits (328), Expect = 4e-173
Identities = 395/425 (93%), Gaps = 14/425 (3%)
Strand=Plus/Plus
Query 4 TCTCAAACTACGAAAACTATGGCTTCAAAATCCGTCGTCGTTTTGCTCTTCCTCGCTCTC 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 TCTCAAACTACGAAAACTATGGCTTCAAAATCCGTCGTCGTTTTGCTCTTCCTCGCTCTC 84
Query 64 ATAGCTTCTTCAGCCATAGCTCAAGCTCCAGGACCAGCTCCAACAAGATCTCCTCTTCCA 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 ATAGCTTCATCAGCCATAGCTCAAGCTCCAGGACCAGCTCCAACAAGATCTCCTCTTCCA 144
Query 124 TCTCCTGCTCAAGCTCCAAGAACCGCCGCACCAACTCCTTCAATCACACCAACTCC--C- 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 145 TCTCCTGCTCAACCTCCAAGAACCGCCGCACCAACTCCTTCAATCACACCAACTCCAACT 204
Query 181 --A-CACCATCCGCTACTCCCACGGCAGCTCCGGTTTCTCCTCCGGCTGGTTCACCACTT 237
| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 205 CCAACACCATCCGCTACTCCCACGGCGGCTCCAGTTTCTCCTCCGGCTGGTTCACCACTT 264
Query 238 CCCTCCTCCGCTTCACCACCCGCTCCTCCAACATCTCTCACTCCCGATGGAT-CTCCCGC 296
|||||||||||||||||||||||||||||||| ||||||||||| ||||| | | || |
Sbjct 265 CCCTCCTCCGCTTCACCACCCGCTCCTCCAACTTCTCTCACTCCTGATGG-TGCACCTGT 323
Query 297 CGCTGGACCGAAC-GGATCCACTCCCGTCGATAAGAACGCCGCCGCCACTCTCGCCGCTG 355
|||||| |||| | |||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct 324 CGCTGGTCCGA-CTGGATCCACTCCCGTCGATAACAACAACGCCGCCACTCTCGCTGCTG 382
Query 356 GATCTTTAGCCGGTTTTGCATTCGTCGCTTCTTTGTTGA-TGTAATTTGGTTAT-TTT-A 412
||||||||||||| |||| |||||||||||||||||| | |||||||||||||| ||| |
Sbjct 383 GATCTTTAGCCGGATTTGTATTCGTCGCTTCTTTGTT-ACTGTAATTTGGTTATATTTTA 441
Query 413 GAATC 417
|||||
Sbjct 442 GAATC 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20006564102
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5