BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942561
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory fact... 1275 0.0
AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1... 874 0.0
AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3... 381 6e-105
AT5G10450.4 | Symbols: GRF6 | G-box regulating factor 6 | chr5:... 307 1e-82
> AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory factor
1 | chr4:5775210-5777481 FORWARD LENGTH=1458
Length=1458
Score = 1275 bits (690), Expect = 0.0
Identities = 738/761 (97%), Gaps = 4/761 (1%)
Strand=Plus/Plus
Query 1 TCATCATCATCTCCGATCTAAACAACAATGGCGACACCAGGAGCATCCTCAGCAAGAGAA 60
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 151 TCATCTTCTTCTCCGATCTAAACAACAATGGCGACACCAGGAGCTTCCTCAGCAAGAGAT 210
Query 61 GAATTCGTATACATGGCGAAACTCGCTGAACAAGCAGAGCGTTACGAAGAAATGGTTGAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 211 GAATTCGTATACATGGCGAAACTCGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAA 270
Query 121 TTCATGGAAAAAGTCGCAAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAAT 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TTCATGGAGAAAGTCGCGAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAAT 330
Query 181 CTCCTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCATGGAGAATCATC 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 331 CTCCTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATT 390
Query 241 TCATCGATCGAACAAAAGGAAGAGTCTCGTGGTAACGATGACCACGTTTCGTTGATCCGT 300
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 391 TCATCGATCGAACAAAAGGAGGAGTCTCGCGGTAACGATGACCACGTTTCGTTGATCCGT 450
Query 301 GACTACAGAAGCAAAATCGAAACGGAGCTTTCTGATATCTGTGACGGAATCCTTAAGCTT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 451 GACTACAGAAGCAAAATCGAAACGGAACTTTCTGATATCTGTGACGGAATCCTTAAGCTT 510
Query 361 CTCGATACGATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCAAAGGTGTTTTACT-TGAA 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 511 CTCGATACGATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTA-TCTGAA 569
Query 420 GATGAAAGGTGATTATCATAGATACTTGGCTGAGTTTAAATCTGGTCAAGAGAGGAAAGA 479
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 570 GATGAAAGGTGATTATCATAGGTACTTGGCTGAGTTCAAATCTGGTCAAGAGAGGAAAGA 629
Query 480 TGCTGCTGAACATACACTCACTGCTTACAAAGCTGCTCAGGATATTGCTAACTCTGAATT 539
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 630 TGCTGCTGAACATACTCTTACTGCTTACAAAGCTGCTCAGGATATTGCTAATTCTGAATT 689
Query 540 GGCTCCAACGCATCCGATTCGTCTTGGT-TTAGCGTTGAACTTCTCTGTGTTTTACTATG 598
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 690 GGCTCCAACGCATCCGATTCGTCTTGGTCTT-GCGTTGAACTTCTCTGTGTTTTACTATG 748
Query 599 AGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAA 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAA 808
Query 659 TTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGC 868
Query 719 TTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 759
|||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 909
Score = 97.1 bits (52), Expect = 2e-19
Identities = 70/78 (90%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 757 CAGGACGATACTACTGATGACATCAAAGAAGCAGCACCAGCAGCACCAAAACCTGCTGA- 815
||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1060 CAGGACGATGTTGCTGATGACATCAAAGAAGCAGCACCAGCAGCAGCAAAACCCGCTGAC 1119
Query 816 -AG-AACAATCCTAAGTC 831
|| ||||||||||||||
Sbjct 1120 GAGCAACAATCCTAAGTC 1137
> AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1:12867126-12868890
FORWARD LENGTH=1402
Length=1402
Score = 874 bits (473), Expect = 0.0
Identities = 655/742 (88%), Gaps = 15/742 (2%)
Strand=Plus/Plus
Query 27 AATGGC-G-A-CACCAGGAGCATCCTCAGCAAGAGAAGAATTCGTATACATGGCGAAA-C 82
|||||| | | |||||| | ||||||| || || ||||| ||||| ||| | || ||| |
Sbjct 138 AATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAGTTCGTGTACCTCGC-AAAGC 196
Query 83 TCGCTGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAAAAAGTCGCAAAAG 142
|||| || ||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 197 TCGCAGAGCAAGCGGAACGTTACGAAGAAATGGTTGAATTCATGGAAAAAGTCGCTGAAG 256
Query 143 CTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 202
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CCGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 316
Query 203 ACGTCATCGGAGCTCGTCGTGCTTCATGGAGAATCATCTCATCGATCGAACAAAAGGAAG 262
|||| ||||| |||||||||||||| |||||||||||||| || || |||||||| ||||
Sbjct 317 ACGTAATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCTTCCATTGAACAAAAAGAAG 376
Query 263 AGTCTCGTGGTAACGATGACCACGTTTCGTTGATCCGTGACTACAGAAGCAAAATCGAAA 322
|| |||||||||||||||||| || | ||||||||| ||||||||||| ||||||
Sbjct 377 AGAGTCGTGGTAACGATGACCATGTGACCACGATCCGTGATTACAGAAGCAAGATCGAAT 436
Query 323 CGGAGCTT-TCTGATA-TCTGTGACGGAATCCTTAAGCTTCTCGATACGATTCTCGTTCC 380
| ||| || || || | |||||||||| || ||||||||||| ||||| | || |||||
Sbjct 437 CTGAG-TTATC-GAAAATCTGTGACGGTATTCTTAAGCTTCTTGATACTAGACTTGTTCC 494
Query 381 CGCTGCTGCTTCTGGAGATTCAAAGGTGTTTTAC-TTGAAGATGAAAGGTGATTATCATA 439
||| ||||| ||||||||| ||||| |||||| || |||||||| || ||||||||||
Sbjct 495 TGCTTCTGCTAATGGAGATTCTAAGGTTTTTTACCTT-AAGATGAAGGGAGATTATCATA 553
Query 440 GATACTTGGCTGAGTTTAA-ATCTGGTCAAGAGAGGAAAGATGCTGCTGAACATACACTC 498
| || |||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 554 GGTATTTGGCTGAGTTTAAGA-CTGGTCAAGAGAGGAAAGATGCTGCTGAACATACTCTC 612
Query 499 ACTGCTTACAAAGCTGCTCAGGATATTGCTAACT-CTGAATTGGCTCCAACGCATCCGAT 557
|| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 613 ACCGCTTACAAAGCTGCTCAGGATATTGCTAA-TGCTGAATTGGCTCCAACGCATCCGAT 671
Query 558 TCGTCTTGGTTTAGCGTTGAACTTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGA 617
|||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 672 TCGTCTTGGTTTGGCTTTGAATTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCAGA 731
Query 618 TCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCT 677
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 732 TCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCTGAGTTAGATACTCT 791
Query 678 TGGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCAC 737
||| || |||||||||||||| ||||| ||||| ||||||||||||||||| || || ||
Sbjct 792 TGGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTTCGTGACAATCTTAC 851
Query 738 TCTCTGGACTTCTGATATGCAG 759
||||||||||||||| ||||||
Sbjct 852 TCTCTGGACTTCTGACATGCAG 873
> AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor
3 | chr5:15409697-15411516 FORWARD LENGTH=1141
Length=1141
Score = 381 bits (206), Expect = 6e-105
Identities = 563/729 (77%), Gaps = 50/729 (7%)
Strand=Plus/Plus
Query 53 CAAGAGAAGA-ATTCGTATACATGGCGAAACTCGCTGAACAAGCAGAGCGTTACGAAGAA 111
|||| ||||| | | || |||||||||||| | || |||||||| || ||||||||||||
Sbjct 150 CAAGGGAAGAGAAT-GTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAA 208
Query 112 ATGGTTGAATTCATGGAAAAAGTCGC-AAAAGCTGTTGACAAAGACGAACTCACCGTCGA 170
||||||||||||||||| ||||| || |||| ||||||| || ||||| | || ||
Sbjct 209 ATGGTTGAATTCATGGAGAAAGTTGCGAAAA-CTGTTGATGTTGAGGAACTTTCAGTTGA 267
Query 171 AGA-ACGTAATCTCCTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCAT 229
||| | | ||||| ||||| || |||||||| ||||| || ||||| | | ||||| |
Sbjct 268 AGAGAGG-AATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGT 326
Query 230 GGAGAATCATCTCATCGATCGAACA-AAAGGA-AGAGTCTC-GTGGTAACGATGACCACG 286
|||||||||| || ||||| || || |||| | |||| | | || ||||| || || |
Sbjct 327 GGAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAG-CAAAG-GG-AACGAAGATCATG 383
Query 287 TTTCG-TTGATCC-GTGACTACAGAAGCAAA-ATCGAAACGGAGCTTT-CTGATATCTGT 342
|| | || ||| | || |||||| | ||| || ||| | |||||| | | ||||||
Sbjct 384 TTGCTATT-ATCAAG-GATTACAGAGG-AAAGATTGAATCCGAGCTTAGCAAA-ATCTGT 439
Query 343 GACGGAATCCTT-AA-GCTTCTCGATA-CG-ATTCTCGTTCCCGCTGCTGCTTCTGGAGA 398
|| || || || || | |||| || | | || || |||| ||||| | | | ||
Sbjct 440 GATGGGATT-TTGAATG-TTCTTGA-AGCTCAT-CTTATTCCTTCTGCTTCACCAGCTGA 495
Query 399 TTC-AAAGGTGTTTTA-CTTGAAGATGAAAGGTGATTATCATAGATA-CTTGGCTGAGTT 455
|| |||| ||||||| ||| |||||||| |||||||||||||| || |||| |||||||
Sbjct 496 ATCTAAAG-TGTTTTATCTT-AAGATGAAGGGTGATTATCATAGGTATCTTG-CTGAGTT 552
Query 456 TAAATCTGGT-CAAGAGAGGAAAGATGCTGCTGAACATACACTCAC-T-GCTTACAAAG- 511
||| ||||| | || |||||||| ||||||||| | |||| | |||||||| |
Sbjct 553 TAAGGCTGGTGCT-GAAAGGAAAGAAGCTGCTGAA-AG-CACTTTGGTTGCTTACAA-GT 608
Query 512 CTGCT-CAGGATATTGCTAACT-CTGAATTGGCTCCAACGCATCCGATTCGTCTTGGT-T 568
||||| | | | ||||| | || |||| || ||||| || || ||||| | |||||| |
Sbjct 609 CTGCTTCCG-ACATTGCCA-CTGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCT 666
Query 569 TAGCGTTGAACTTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTA 628
| || | ||||||||||||||||||||||| || ||||| || |||||||||||||| |
Sbjct 667 T-GCACTCAACTTCTCTGTGTTTTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCA 725
Query 629 ATCTCGCTAAGCAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTTGG-TGAAGAG 687
||||| ||||||||||||||||| ||||| ||||| || ||||| |||| ||| ||
Sbjct 726 GCCTCGCAAAGCAGGCGTTTGATGATGCAATCGCTGAGTTAGATACA-TTGGGTGAGGAA 784
Query 688 TCATACAAGGACAGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACT 747
||||||||||||||||| ||||||||||||||||| | || || |||||||||||||||
Sbjct 785 TCATACAAGGACAGTACACTGATTATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACT 844
Query 748 TCTGATATG 756
|| ||||||
Sbjct 845 TCAGATATG 853
> AT5G10450.4 | Symbols: GRF6 | G-box regulating factor 6 | chr5:3283853-3286347
REVERSE LENGTH=1531
Length=1531
Score = 307 bits (166), Expect = 1e-82
Identities = 541/716 (76%), Gaps = 49/716 (7%)
Strand=Plus/Plus
Query 70 TACATGGCGAAACTCGCTGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAA 129
||||||||||| ||||| || || || |||||||||||||| |||||| ||||||||| |
Sbjct 120 TACATGGCGAAGCTCGCCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGG-A 178
Query 130 AAAG-TCG---CAAAAGCTGTTGACA-AAGACGAACTCACCGTCGAAGA-ACGTAATCTC 183
| || ||| || ||| | || || || |||||||| ||||| | | ||||||
Sbjct 179 ACAGCTCGTTACAGGCGCTACT-CCAGCGGAAGAGCTCACCGTTGAAGAGA-GGAATCTC 236
Query 184 CTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGT-CGTGCTTCATGGAGAATCATCTC 242
||||| || |||||||||||||| |||||| ||| | || || | ||||| ||| | ||
Sbjct 237 CTCTCTGTTGCTTACAAAAACGTGATCGGATCTC-TACGCGCCGCCTGGAGGATCGTGTC 295
Query 243 ATCGATCGAACAAAAGGAAGAGTCT-CGTGGTAACGATGACCACGTTTCG-TTGATC-CG 299
||||| || || ||||||||| | | | ||||| || ||||| ||| ||| || |
Sbjct 296 TTCGATTGAGCAGAAGGAAGAGAGTAGGAAG-AACGACGAGCACGTGTCGCTTG-TCAAG 353
Query 300 TGACTACAGAAGC-AAAATCGAAACGGAGCTTTCTGATATCTGTG-AC-GGAATCCTTAA 356
|| ||||| | | ||| | || | ||||||||| | | | || | |||||||||||
Sbjct 354 -GATTACAG-ATCTAAAGTTGAGTCTGAGCTTTCT--TCTGTTTGCTCTGGAATCCTTAA 409
Query 357 GCTTCTCGA-TACG-ATTCTCGTTCCC-GCTGCTGCTTCTG-GAGATTCAAAGGTGTTTT 412
||| || || | || | ||| | |||| |||||| | | | || || ||||| ||||
Sbjct 410 GCTCCTTGACT-CGCA-TCT-GATCCCATCTGCTGGAGC-GAGTGAGTCTAAGGTCTTTT 465
Query 413 ACTTGAAGATGAAAGGTGATTATCATAGATACTTGGCTGAGTTTAAATCTGGTCAAGAGA 472
|||||||||||||||||||||||||| | ||| ||||||||||||| |||||| | ||||
Sbjct 466 ACTTGAAGATGAAAGGTGATTATCATCGGTACATGGCTGAGTTTAAGTCTGGTGATGAGA 525
Query 473 GGAAAGA-TGCTGCTGAACATAC-ACT-CACTGCTTACAAAGCTGCTCAGGATATTGCTA 529
||||| | |||||||||| |||| | | | | ||||||||||| ||||||||||| || |
Sbjct 526 GGAAA-ACTGCTGCTGAAGATACCA-TGCTC-GCTTACAAAGCAGCTCAGGATATCGC-A 581
Query 530 ACT-CTGA-ATTGGCTCCAACGCATCCGATTCGTCTTGGTTTAGCGTTGAACTTCTCTGT 587
|| | || || ||| || || |||||||| | |||||| | || |||| ||||| ||
Sbjct 582 GCTGCGGATAT-GGCACCTACTCATCCGATAAGGCTTGGTCTGGCCCTGAATTTCTCAGT 640
Query 588 GTTTTACTATGAGATTCTCAATTCTCCTGATCGT-GCTTGTAATC-TCGCTAAGCAGGCG 645
||| ||||||||||||||||||||| | || | |||||||| | | || || |||||
Sbjct 641 GTTCTACTATGAGATTCTCAATTCTTCAGA-CAAAGCTTGTAA-CATGGCCAAACAGGCT 698
Query 646 TTTGATGAAGCAATTGCTGAA-TTGGATACTCTTGGTGAAGAGTCATACAAGGACAGTAC 704
||||| || || || ||||| ||| | ||||| || || || || ||||| ||||| ||
Sbjct 699 TTTGAGGAGGCCATAGCTGAGCTTG-ACACTCTGGGAGAGGAATCCTACAAAGACAGCAC 757
Query 705 TTTGATTATGCAGCTT-CTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 759
| | || |||||| || || | || || | || || ||||| || |||||||||
Sbjct 758 TCTCATAATGCAG-TTGCTGAGGGACAATTTAACCCTTTGGACCTCCGATATGCAG 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5