BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942562

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59190.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   189    1e-47


> AT3G59190.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr3:21884527-21886776 FORWARD LENGTH=2055
Length=2055

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 169/201 (84%), Gaps = 6/201 (3%)
 Strand=Plus/Plus

Query  1     TCTCTAGTTACAAAGATGACATGGATAAGCATACGGAGGTGATCAAGTA-TTTCTTGGAG  59
             |||||||||| |||||||||||||| | ||| |||||  | ||| || | ||| ||||||
Sbjct  1590  TCTCTAGTTATAAAGATGACATGGAGAGGCAGACGGATCTTATCGAGCACTTT-TTGGAG  1648

Query  60    AT-AATGCTGAATCTTGAACAAGCGATATTATACGATGATACGCCATTTGATGATGATCT  118
              | |||||  || |||||||| | |||||||| | |||| ||  ||| ||||||||||||
Sbjct  1649  -TCAATGCCAAACCTTGAACAGGTGATATTATTCTATGACACTACATATGATGATGATCT  1707

Query  119   -AAGTATAATATCAACCGAACTTCAGATGCATGAAAATGTAGCCTCACCCAAATGCAAGA  177
              ||  ||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct  1708  GAA-AATAGTATCAACCCAACTTCAGATGCTTGAAAAAGTAGCCTCACCCAAATGCAAGA  1766

Query  178   TCCAAGTTATCTCTGATAACA  198
             ||||||| |||||||||||||
Sbjct  1767  TCCAAGTAATCTCTGATAACA  1787



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10757298286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5