BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942570
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08940.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1703 0.0
> AT4G08940.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr4:5730797-5732195 REVERSE LENGTH=1399
Length=1399
Score = 1703 bits (922), Expect = 0.0
Identities = 1132/1231 (92%), Gaps = 24/1231 (2%)
Strand=Plus/Plus
Query 12 ATTCCTCAAATGGCTTGGTTTCGATTCTTCTCAAGAACCCTAATAAAATCTCAAAACCCA 71
||| |||||||||||||| |||| |||||||||||||||| |||||||| |
Sbjct 14 ATTACTCAAATGGCTTGGCTTCGTTTCTTCTCAAGAACCC---TAAAATCT-------C- 62
Query 72 ATCCTTCCCCAAATCTCATCTTCTTCCCCAAACCCTAACCCTAATCTCAGAACCTTACCT 131
| | ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 63 -T-C--CCCCAAATCTCATCTTCTTCCCCAAACCCTAACCCTAATTTCAGAACCTCACCT 118
Query 132 TTCTCAACCTCATTTCTCATCACaaaaacaccaaacaaattaaaaaaaaggcgaaaaaaa 191
|||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 119 TTCTCAACCTCATTCCTCATCACGAAAACACCAGACAAATTAAAAAAAAAGCGAAAAAAA 178
Query 192 CCAGAATCCGCAAGAACCAAATCAATCCAACACGAATCAACCAAAATCCCACACTTCGAA 251
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 179 CCAGAATCCGCCAGAACCAAATCAATCCAACACGAATCAACCAAACTCCCACACTTGGAA 238
Query 252 TCACTCGTTTCACGCGACGCTCATTTCCGATTCCTAATCCGATCCAAAGAATTCATCTCA 311
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCACTCGTTTCACGCGACGCACATTTCCGATTCCTAATCCGATCCAAAGAATTCATCTCA 298
Query 312 AAGCAACCAGAGCGAATTCTCCGACTAGATGACGCCGGAAAACTCTACCGTGAGCTCGGA 371
|||||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 299 AAGCAACCGGAGCGAATCCTCCGACTAGACGACGCCGGAAAACTCTACCGCGAACTCGGA 358
Query 372 TTCCCACGCGGTCGTAAGGTTACTCGATTCATACCAAAACATCCTCTGATTTTTCAAACG 431
||||| ||||||||||| ||||| ||||||||| ||||||||| |||| |||||||||
Sbjct 359 TTCCCTCGCGGTCGTAAAGTTACGAAATTCATACCTAAACATCCTTTGATCTTTCAAACG 418
Query 432 TATCGACATAACGATGGGAAGATTTGGTTAGGGTTTTCGGAGTTTATGGAGGATTTGTTA 491
||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 419 TATAGACATAGCGATGGGAAGATTTGGTTAGGGTTTACGGAATTTATGGAGGATTTGTTA 478
Query 492 GATGAAGAGAAAGGTTTAATGGAATTAATGGAGTTAGATAGAGTTAATCGAGTTCGTAAG 551
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 479 GATGAAGAGAAAGGTTTAATGGAATCAATGGAGTTAGATAGAGTTAATTGTGTTCGTAAG 538
Query 552 TTGTTGATGATGACGAAAGATAAACGAATTTTGTTGAGTAAAATCCATCACACTCGATTG 611
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 CTATTGATGATGACGAAAGATAAACGAATCCTGTTGAGTAAAATCCATCACACTCGATTG 598
Query 612 CTATTCGGTATTCCTGAAGATTTTCGAGACCAGGTTGCGAAGTATCCGGATTATTTCCGG 671
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 599 CTATTCGGTATTCCTGAAGATTTTCGAGACCGGGTTGCGAAATATCCGGATTATTTTCGG 658
Query 672 GTTGTTACGGGTGGAGATGGGAATCGAGTGCTTGAGTTGGTGAATTGGGATGCGAATCTT 731
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 659 GTTGTTACGGGTGGAGATGGGAATAGAGTGCTTGAGTTAGTGAATTGGGACACGAATCTT 718
Query 732 GCGGTTAGTGAGCTCGAAAGACAGTTTATGGTTGACGAAGATAAAGCGAAACGAGCT-TT 790
||||| ||||||||||| |||| ||||||| ||||||||||||| |||||||| | | ||
Sbjct 719 GCGGTAAGTGAGCTCGAGAGACTGTTTATGATTGACGAAGATAAGGCGAAACGGG-TGTT 777
Query 791 TAAGTTTCCGGTGAAACATGGGAAGGAGTTGGAATTGGAAGAGAAGGATAAGAGGAAGCT 850
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 778 TAAGTTTCCGGTGAAGCATGGGAAGGAGTTGGAGTTGGAAGAGAAGGATACGAGGAAGCT 837
Query 851 GAATCAGTTGAATACGTTTCCT-TTGGTTTCGCCGTATTCGGATGGTTGGAAGTTTGATG 909
|||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 838 GAATTTGTTGAATACGTTTCCTCTTG-TTTCGCCGTATTCGGATGGTTGGAAGCTTGATG 896
Query 910 TGTGGACGTTAG-AAGCGGAGAAGTACCGTGTTGGGATTGTTCACGAGTTCTTGAACTTG 968
| |||| ||| | ||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 897 TTTGGA-GTTTGGAAGCGGAGAAGTATCGCGTTGGGATTGTGCACGAGTTCTTGAACTTG 955
Query 969 ACGTTGGAGAAAAGAGCTTCGATTCATCATATTGTGGAGTTTAAAGATGAGTTTAGTTTA 1028
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACGTTGGAGAAGAGAGCTTCGATTCATCATATTGTGGAGTTTAAAGATGAGTTTAGTTTG 1015
Query 1029 ACTAGACAGACTTATCTGATGTTGAAGAAGCAGCCCACGACTTTTTACTTGGCTGGTACT 1088
|||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||
Sbjct 1016 ACTAGACAGACTTATCAGATGTTGAAGAAGCAGTCCATGAGTTTTTACTTGGCTGGTACT 1075
Query 1089 GAGATGAATTGGACTGTGTTTTTGAAGGATGGTTACGACGAGAATGGTGTTTTGATTAGT 1148
|||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1076 GAGATGAACTGGACTGTGTTTTTGAAGGATGCTTACGACGAGAATGGTGTTTTGGTTAGT 1135
Query 1149 AAAGATCCACAGGTTGTGTTTAATGAAAAGCTGTATAAGTATGCAGATATGCAGCAGATG 1208
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1136 AAAGATCCACAGGTTGTGTTTAATGAAAAGCTCTATAAGTATGCAGATATGCAGCAGATG 1195
Query 1209 GA--A-GTTAATTAATTCTGGCTAAAACAAT 1236
|| | ||| |||||||||||| ||| |||
Sbjct 1196 GAGCAAGTTGGTTAATTCTGGCTCAAATAAT 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5