BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942570 Length=1243 Score E Sequences producing significant alignments: (Bits) Value AT4G08940.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1703 0.0 > AT4G08940.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:5730797-5732195 REVERSE LENGTH=1399 Length=1399 Score = 1703 bits (922), Expect = 0.0 Identities = 1132/1231 (92%), Gaps = 24/1231 (2%) Strand=Plus/Plus Query 12 ATTCCTCAAATGGCTTGGTTTCGATTCTTCTCAAGAACCCTAATAAAATCTCAAAACCCA 71 ||| |||||||||||||| |||| |||||||||||||||| |||||||| | Sbjct 14 ATTACTCAAATGGCTTGGCTTCGTTTCTTCTCAAGAACCC---TAAAATCT-------C- 62 Query 72 ATCCTTCCCCAAATCTCATCTTCTTCCCCAAACCCTAACCCTAATCTCAGAACCTTACCT 131 | | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 63 -T-C--CCCCAAATCTCATCTTCTTCCCCAAACCCTAACCCTAATTTCAGAACCTCACCT 118 Query 132 TTCTCAACCTCATTTCTCATCACaaaaacaccaaacaaattaaaaaaaaggcgaaaaaaa 191 |||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||| Sbjct 119 TTCTCAACCTCATTCCTCATCACGAAAACACCAGACAAATTAAAAAAAAAGCGAAAAAAA 178 Query 192 CCAGAATCCGCAAGAACCAAATCAATCCAACACGAATCAACCAAAATCCCACACTTCGAA 251 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 179 CCAGAATCCGCCAGAACCAAATCAATCCAACACGAATCAACCAAACTCCCACACTTGGAA 238 Query 252 TCACTCGTTTCACGCGACGCTCATTTCCGATTCCTAATCCGATCCAAAGAATTCATCTCA 311 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 239 TCACTCGTTTCACGCGACGCACATTTCCGATTCCTAATCCGATCCAAAGAATTCATCTCA 298 Query 312 AAGCAACCAGAGCGAATTCTCCGACTAGATGACGCCGGAAAACTCTACCGTGAGCTCGGA 371 |||||||| |||||||| ||||||||||| |||||||||||||||||||| || |||||| Sbjct 299 AAGCAACCGGAGCGAATCCTCCGACTAGACGACGCCGGAAAACTCTACCGCGAACTCGGA 358 Query 372 TTCCCACGCGGTCGTAAGGTTACTCGATTCATACCAAAACATCCTCTGATTTTTCAAACG 431 ||||| ||||||||||| ||||| ||||||||| ||||||||| |||| ||||||||| Sbjct 359 TTCCCTCGCGGTCGTAAAGTTACGAAATTCATACCTAAACATCCTTTGATCTTTCAAACG 418 Query 432 TATCGACATAACGATGGGAAGATTTGGTTAGGGTTTTCGGAGTTTATGGAGGATTTGTTA 491 ||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 419 TATAGACATAGCGATGGGAAGATTTGGTTAGGGTTTACGGAATTTATGGAGGATTTGTTA 478 Query 492 GATGAAGAGAAAGGTTTAATGGAATTAATGGAGTTAGATAGAGTTAATCGAGTTCGTAAG 551 ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 479 GATGAAGAGAAAGGTTTAATGGAATCAATGGAGTTAGATAGAGTTAATTGTGTTCGTAAG 538 Query 552 TTGTTGATGATGACGAAAGATAAACGAATTTTGTTGAGTAAAATCCATCACACTCGATTG 611 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 539 CTATTGATGATGACGAAAGATAAACGAATCCTGTTGAGTAAAATCCATCACACTCGATTG 598 Query 612 CTATTCGGTATTCCTGAAGATTTTCGAGACCAGGTTGCGAAGTATCCGGATTATTTCCGG 671 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| Sbjct 599 CTATTCGGTATTCCTGAAGATTTTCGAGACCGGGTTGCGAAATATCCGGATTATTTTCGG 658 Query 672 GTTGTTACGGGTGGAGATGGGAATCGAGTGCTTGAGTTGGTGAATTGGGATGCGAATCTT 731 |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| Sbjct 659 GTTGTTACGGGTGGAGATGGGAATAGAGTGCTTGAGTTAGTGAATTGGGACACGAATCTT 718 Query 732 GCGGTTAGTGAGCTCGAAAGACAGTTTATGGTTGACGAAGATAAAGCGAAACGAGCT-TT 790 ||||| ||||||||||| |||| ||||||| ||||||||||||| |||||||| | | || Sbjct 719 GCGGTAAGTGAGCTCGAGAGACTGTTTATGATTGACGAAGATAAGGCGAAACGGG-TGTT 777 Query 791 TAAGTTTCCGGTGAAACATGGGAAGGAGTTGGAATTGGAAGAGAAGGATAAGAGGAAGCT 850 ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 778 TAAGTTTCCGGTGAAGCATGGGAAGGAGTTGGAGTTGGAAGAGAAGGATACGAGGAAGCT 837 Query 851 GAATCAGTTGAATACGTTTCCT-TTGGTTTCGCCGTATTCGGATGGTTGGAAGTTTGATG 909 |||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||| Sbjct 838 GAATTTGTTGAATACGTTTCCTCTTG-TTTCGCCGTATTCGGATGGTTGGAAGCTTGATG 896 Query 910 TGTGGACGTTAG-AAGCGGAGAAGTACCGTGTTGGGATTGTTCACGAGTTCTTGAACTTG 968 | |||| ||| | ||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 897 TTTGGA-GTTTGGAAGCGGAGAAGTATCGCGTTGGGATTGTGCACGAGTTCTTGAACTTG 955 Query 969 ACGTTGGAGAAAAGAGCTTCGATTCATCATATTGTGGAGTTTAAAGATGAGTTTAGTTTA 1028 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 ACGTTGGAGAAGAGAGCTTCGATTCATCATATTGTGGAGTTTAAAGATGAGTTTAGTTTG 1015 Query 1029 ACTAGACAGACTTATCTGATGTTGAAGAAGCAGCCCACGACTTTTTACTTGGCTGGTACT 1088 |||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||| Sbjct 1016 ACTAGACAGACTTATCAGATGTTGAAGAAGCAGTCCATGAGTTTTTACTTGGCTGGTACT 1075 Query 1089 GAGATGAATTGGACTGTGTTTTTGAAGGATGGTTACGACGAGAATGGTGTTTTGATTAGT 1148 |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1076 GAGATGAACTGGACTGTGTTTTTGAAGGATGCTTACGACGAGAATGGTGTTTTGGTTAGT 1135 Query 1149 AAAGATCCACAGGTTGTGTTTAATGAAAAGCTGTATAAGTATGCAGATATGCAGCAGATG 1208 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1136 AAAGATCCACAGGTTGTGTTTAATGAAAAGCTCTATAAGTATGCAGATATGCAGCAGATG 1195 Query 1209 GA--A-GTTAATTAATTCTGGCTAAAACAAT 1236 || | ||| |||||||||||| ||| ||| Sbjct 1196 GAGCAAGTTGGTTAATTCTGGCTCAAATAAT 1226 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61094063265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5