BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942571
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:57291... 1266 0.0
AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748... 411 8e-114
> AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:5729192-5730850
FORWARD LENGTH=1333
Length=1333
Score = 1266 bits (685), Expect = 0.0
Identities = 862/946 (91%), Gaps = 17/946 (2%)
Strand=Plus/Plus
Query 1 GTTTTGTTTAAGAAAATTTCTTCTACAATGGAGAAGAAGCCGATTttgttgttgttgttg 60
||||||| || |||| |||||||| | ||||||||||||| || ||||||||||||| |
Sbjct 293 GTTTTGTCTAGGAAATTTTCTTCTTCGATGGAGAAGAAGCTGACTTTGTTGTTGTTG--G 350
Query 61 ttgATGGTGATTATGTTCATAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT 120
||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTG-TGGTGGTTTTGTTCGTAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT 409
Query 121 AAAGGATCTGCAAAAGATTATATCTTAGGGTTTCAAGATAAATCAGCCTTGCATCGTCCT 180
| || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 410 AGAGAATCTGCAAAAGATTATATCTTAGGGTTTCGAGATAAGTCAGCCTTGCATCGTCCT 469
Query 181 GCTTTTGTCACCGAGGGAGATGATCAGTGGTTACAAATGGCTTCTGATATGATTGAT--- 237
| ||||||||| ||||||||||||| |||| ||||||||||| | |||||| |||||
Sbjct 470 GGTTTTGTCACTGAGGGAGATGATCGGTGGCTACAAATGGCTGCAGATATGGTTGATAAG 529
Query 238 AAGAACAAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA 297
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AAGAATAAGTGTGACTATGCGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA 589
Query 298 TTACTTAGACCAAGCTTTGATCTTATGTCTTTGTTATATTCATCGGTTCCTCACTTTGCA 357
||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 590 TTAGTTAGACCAAGTTTTGATCTTATGTCTCTGTTATATTCATCGGTTCCACACTTTGCA 649
Query 358 ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT 709
Query 418 ACTATCATCCTTATGAATTCAACAATGGGCGTAGTTTACCGGGGATCCAGAACTCTAGAT 477
|||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||
Sbjct 710 ACTATCATCCTTATGAATTCGACAATGCTCGTAGTTTACCGGGGATCGAGAACTCTTGAT 769
Query 478 TCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGAAAAGCTGGATGAAACTTGGGTT 537
|| |||||||||||||||| ||||||||| |||||||||| | ||||||||| ||||||
Sbjct 770 TCCCTTGTTGCCTTCTACACTGATGTTACGGGAATTGAAACGATGGATGAAAGATGGGTT 829
Query 538 GAGAAGAA-CAGGTTAGTTCATCATTTCCACAC-GAAGCCAGAGAATTGCCCCTTCCCAT 595
|||| ||| ||| ||||||| |||||||||| | || |||||| |||||||| |||||||
Sbjct 830 GAGA-GAAACAGATTAGTTCCTCATTTCCACGCAGA-GCCAGAAAATTGCCCGTTCCCAT 887
Query 596 GGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTACCTGACTCTTGCCACGG 655
|||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 888 GGGCAAGAAGATCACCCGAGAATCTGCTTCGCCAAGAGACTTATCTGACGCTTGCCACGG 947
Query 656 TTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAATGGTTGTGTTAGCGAAAT 715
| ||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct 948 TGTTCGTCTTGTTGAGATTACTACACTTGATTTCCCCCACAATGGTTGTGTTCGTGAAAT 1007
Query 716 CCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAACCTTCT-GGAGCATACCCTT 774
||||||||||||||| | ||| |||||||||| ||||||| || ||| ||||| |
Sbjct 1008 TCACTTGGGGACGGGT-G-TCA-AACATGAGACTAGGGAACCC-CTTGGAACATACTGT- 1062
Query 775 G-CCATGTATCTCAAAGAACCTTGCATGAGTAGCAATTTGCAAGAAGGAGCCATGAATGC 833
| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1063 GACCATGTATCTTAAAGAACCTTGCATGAGTAGCAATTTGCAGGAAGGAGCCATGAATGC 1122
Query 834 TAGAGCATGGGCTTCCAAGTCTTTGGCCACTGTCTCAATTGGGGAATCAAGCTCATCAAG 893
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1123 TAGAGCATGGGCTTCCAAGTCTTTGGCTACTGTCTCAATTGCAGAATCAAGCTCATCAAG 1182
Query 894 CAGAAGTGTTTCAGCTTCACAGTGACTTTATATTTTAACCTTCTTG 939
|||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1183 CAGAAGTGTTTCAGCTTCACAGTGACTTCATATTTTAACCATCTTG 1228
> AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748571-12750383
REVERSE LENGTH=1456
Length=1456
Score = 411 bits (222), Expect = 8e-114
Identities = 607/783 (78%), Gaps = 65/783 (8%)
Strand=Plus/Plus
Query 186 TGTCACCGAGGGAGATGATCAG-TGGTTACAAATGGC-TTCTGATATGATTGATAAGAAC 243
|||||||||||| ||||| | | ||||| ||||| || || ||||||||| ||||||||
Sbjct 439 TGTCACCGAGGGTGATGAGC-GTTGGTTGCAAATAGCATT-GGATATGATTCATAAGAAC 496
Query 244 AAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGATTACTT 303
|||||||| ||||||||||| || |||||||||||||||||||| ||||| || | | ||
Sbjct 497 AAGTGTGATTATGTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTT 556
Query 304 AGACCAAGCTTT-GATCTTATGTCTTTGT-TATATTCATCGGTTCCTCACTTTGCAATTG 361
||||| || ||| ||| |||| || || | | ||||| || ||||||| ||||| |||
Sbjct 557 AGACCGAG-TTTCGATGTTATCTC-TTCTCTCTATTCCTCCATTCCTCATTTTGCCATTA 614
Query 362 AGGAATCAT-CAGTTAAAG-CTAGTA-CCTTGTCCAAGTATGGAGTTCATGGGTTTCCTA 418
||||||||| || || ||| |||| | |||| |||||||||||||||||||||||||| |
Sbjct 615 AGGAATCATCCA-TT-AAGCCTAGCACCCTT-TCCAAGTATGGAGTTCATGGGTTTCCCA 671
Query 419 CTATCATCCTTATGAATTCAACAATG-GGCGTA-GTTTACCGGGGATCCAGAACT-CTAG 475
|| || | ||| ||||||| |||||| || | | | ||||| ||| || ||| | || |
Sbjct 672 CTCTCTTACTTTTGAATTCGACAATGCGG-GCACG-ATACCGAGGAACCCGAA-TGCTTG 728
Query 476 ATTCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGA-AAAGCTGGATGAAACTTGG 534
||||||||||||| ||||||||||||||||| || ||||| | | ||||| ||||||
Sbjct 729 ATTCTCTTGTTGCTTTCTACAGTGATGTTACCGGCATTGAGACA-TTGGATAAAACTTCT 787
Query 535 GTTGAGAAGAACAG-GT-T-AGTTCATCAT-T---T--C-----C-ACACGA-AGCCAGA 578
| ||| || | || || | ||||| |||| | | | | |||| | |||||||
Sbjct 788 CTCGAG-AG-A-AGCGTATCAGTTCCTCATCTCGGTAACGAAAACAACAC-AGAGCCAGA 843
Query 579 GAATTGCCCCTTCCCATGGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTA 638
|| || || ||| | |||| ||||||| || |||||| ||||||| |||||||| ||
Sbjct 844 AAACTGTCCATTCACGTGGG---CAAGATCGCCTGAGAATATGCTTCGACAAGAGACCTA 900
Query 639 CCTGA-CTCTTGCCACGGTTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAA 697
|| | ||||||||| || |||||| ||||||||||||| || ||||| | || |||
Sbjct 901 TCT-AGCTCTTGCCATTGTATTCGTCCTGTTGAGATTGCTTCACTTGATATATCCTACAC 959
Query 698 TGGTTGTG-TTAGCGAAATCCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAA- 755
| || ||| ||| ||| | ||||||| ||||| ||||||| ||||||||| | | ||
Sbjct 960 TCGTCGTGTTTA-TGAAGTTCACTTGGAGACGGATTGCTCAGAACATGAGA-CTAGAAAG 1017
Query 756 CCTTCTGGAGCATACC--C---TTGCCATG--TA--TCT-CAAAGAACCTTGCAT-G-AG 803
||| || || |||||| | || | | | | | | ||| | | ||||| | ||
Sbjct 1018 CCTGCTAGAACATACCGTCGGGTTTCTAAGCCGAGCTGTACAATTATGCATGCATAGAAG 1077
Query 804 TAGCAATTTGCAAGAAGGAGCCATGAATGCTAGAGCATGGGCTTCCAAGTCTTTGGCCAC 863
|||||| |||| | ||| || ||||| |||||||||||||| || ||||||||||||||
Sbjct 1078 AAGCAATCTGCAGGGAGGGGCTATGAACGCTAGAGCATGGGCCTCTAAGTCTTTGGCCAC 1137
Query 864 TGTCTCAATTGGGGAATCAAGCTCATCAAGCAGAAGT-GTTTCAGCTTCACAGTGACTTT 922
||||||||||||||| ||||||||||||| |||||| ||| || |||| |||||||||
Sbjct 1138 TGTCTCAATTGGGGATTCAAGCTCATCAAACAGAAGAAGTT-CATCTTCTCAGTGACTTC 1196
Query 923 ATA 925
|||
Sbjct 1197 ATA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5