BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942576
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 904 0.0
> AT4G08910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G78170.1);
Has 68 Blast hits to 68 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:5712346-5713384
FORWARD LENGTH=819
Length=819
Score = 904 bits (489), Expect = 0.0
Identities = 622/685 (91%), Gaps = 14/685 (2%)
Strand=Plus/Plus
Query 1 TCGTACGTATAAATATTTCTATATGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 60
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 19 TCGTACGTATAAATTTTTCTACGTGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 78
Query 61 GTTGTTGAAGAAACCAAAGATCGCTTCATCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 120
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 79 GTTGCTGAAGAAACCAAAGATCGCTTCGTCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 138
Query 121 AAAAAGAAAGGGTCAAGAATTTTTAGCAAATGATGAGGTCGTCAAAAGAT-C--CGAATC 177
||||||||||| ||||||||||||||||||||||||| | ||||||||| | ||||||
Sbjct 139 AAAAAGAAAGGTTCAAGAATTTTTAGCAAATGATGAGATTTTCAAAAGATCCGACGAATC 198
Query 178 ACAAAACTTTACAC-ATACTTCGTTTGATCAGAAGAGAAAAAGATACAGTGAAGATTCAA 236
|||||| ||| | | || | |||||||| ||||||| ||||| || |||||||||||
Sbjct 199 TCAAAACCTTA-TCGTTTCTCCCTTTGATCATAAGAGAAGAAGATTCAATGAAGATTCAA 257
Query 237 AAAATGTGAATAATAATATCGAAGAAGGATATAGTCACCACCACATGAGCCTTAATCTTG 296
||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 258 AAAATATGAATAATAATATAGAAGAAGGATATAATCACCACCACATGAGCCTTGATCTTG 317
Query 297 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCAAGAT--AATTACT-ACA 353
||||||||||||||||||||||||||||||||||||||||||| ||| || || | |||
Sbjct 318 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCATGATCTAAGTAATTACA 377
Query 354 A-AA-G-TTATGAGGACGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTTGGTCTTGG 410
| || | ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 378 ACAAAGGTTATGAGGAAGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTCGGTGTTGG 437
Query 411 GGCTAGAGACAAGGAAAAGGATGTCAAGGGTTGCTTTTGATCTCGATGAAGATTGTTGCG 470
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 438 GGCTAGAGACAAAGAAAAGCATGTCAAGGGTTGCTTTTGATCTCGATGACGATTGTTGCG 497
Query 471 ACCGCGGTG--G-TGTTGGCGGTGGAAGCGAGGAAGAGATGGTTGCGAGAGTGTGTATGA 527
||||||||| | |||||| || ||||||||||||||||||| ||||||||||| ||||
Sbjct 498 ACCGCGGTGATGGTGTTGGTGGCAGAAGCGAGGAAGAGATGGTGGCGAGAGTGTGCATGA 557
Query 528 AGTGTCATATGCTAGTGATGTTGTGTAAAGCATCACCGGCGTGCCCTAATTGCAAGTTTA 587
|||| |||||| |||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 558 AGTGCCATATGTTAGTGATGCTGTGTAAAGCGTCACCGGCTTGCCCTAATTGCAAGTTTA 617
Query 588 TGCATTCACCTCAAGACACCTCTCTCTCACTTATTTTTACTCCTAAGCCTACTTTGTTAG 647
||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||| ||
Sbjct 618 TGCATTCACCTGAAGACACCTCTCTCTCACTTCTTTTTACTCCTAAGCCAAGTTTGTCAG 677
Query 648 CTTAGTTATTGTTTAGTTTCTAATC 672
|||||||||||||| ||||||||||
Sbjct 678 CTTAGTTATTGTTTGGTTTCTAATC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5