BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942576 Length=672 Score E Sequences producing significant alignments: (Bits) Value AT4G08910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 904 0.0 > AT4G08910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:5712346-5713384 FORWARD LENGTH=819 Length=819 Score = 904 bits (489), Expect = 0.0 Identities = 622/685 (91%), Gaps = 14/685 (2%) Strand=Plus/Plus Query 1 TCGTACGTATAAATATTTCTATATGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 60 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 19 TCGTACGTATAAATTTTTCTACGTGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 78 Query 61 GTTGTTGAAGAAACCAAAGATCGCTTCATCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 120 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 79 GTTGCTGAAGAAACCAAAGATCGCTTCGTCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 138 Query 121 AAAAAGAAAGGGTCAAGAATTTTTAGCAAATGATGAGGTCGTCAAAAGAT-C--CGAATC 177 ||||||||||| ||||||||||||||||||||||||| | ||||||||| | |||||| Sbjct 139 AAAAAGAAAGGTTCAAGAATTTTTAGCAAATGATGAGATTTTCAAAAGATCCGACGAATC 198 Query 178 ACAAAACTTTACAC-ATACTTCGTTTGATCAGAAGAGAAAAAGATACAGTGAAGATTCAA 236 |||||| ||| | | || | |||||||| ||||||| ||||| || ||||||||||| Sbjct 199 TCAAAACCTTA-TCGTTTCTCCCTTTGATCATAAGAGAAGAAGATTCAATGAAGATTCAA 257 Query 237 AAAATGTGAATAATAATATCGAAGAAGGATATAGTCACCACCACATGAGCCTTAATCTTG 296 ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| Sbjct 258 AAAATATGAATAATAATATAGAAGAAGGATATAATCACCACCACATGAGCCTTGATCTTG 317 Query 297 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCAAGAT--AATTACT-ACA 353 ||||||||||||||||||||||||||||||||||||||||||| ||| || || | ||| Sbjct 318 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCATGATCTAAGTAATTACA 377 Query 354 A-AA-G-TTATGAGGACGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTTGGTCTTGG 410 | || | ||||||||| |||||||||||||||||||||||||||||||||| ||| |||| Sbjct 378 ACAAAGGTTATGAGGAAGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTCGGTGTTGG 437 Query 411 GGCTAGAGACAAGGAAAAGGATGTCAAGGGTTGCTTTTGATCTCGATGAAGATTGTTGCG 470 |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 438 GGCTAGAGACAAAGAAAAGCATGTCAAGGGTTGCTTTTGATCTCGATGACGATTGTTGCG 497 Query 471 ACCGCGGTG--G-TGTTGGCGGTGGAAGCGAGGAAGAGATGGTTGCGAGAGTGTGTATGA 527 ||||||||| | |||||| || ||||||||||||||||||| ||||||||||| |||| Sbjct 498 ACCGCGGTGATGGTGTTGGTGGCAGAAGCGAGGAAGAGATGGTGGCGAGAGTGTGCATGA 557 Query 528 AGTGTCATATGCTAGTGATGTTGTGTAAAGCATCACCGGCGTGCCCTAATTGCAAGTTTA 587 |||| |||||| |||||||| |||||||||| |||||||| ||||||||||||||||||| Sbjct 558 AGTGCCATATGTTAGTGATGCTGTGTAAAGCGTCACCGGCTTGCCCTAATTGCAAGTTTA 617 Query 588 TGCATTCACCTCAAGACACCTCTCTCTCACTTATTTTTACTCCTAAGCCTACTTTGTTAG 647 ||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||| || Sbjct 618 TGCATTCACCTGAAGACACCTCTCTCTCACTTCTTTTTACTCCTAAGCCAAGTTTGTCAG 677 Query 648 CTTAGTTATTGTTTAGTTTCTAATC 672 |||||||||||||| |||||||||| Sbjct 678 CTTAGTTATTGTTTGGTTTCTAATC 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32501493109 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5