BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942580
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45063.1 | Symbols: | copper ion binding;electron carriers ... 785 0.0
> AT1G45063.1 | Symbols: | copper ion binding;electron carriers
| chr1:17033335-17035105 REVERSE LENGTH=1329
Length=1329
Score = 785 bits (425), Expect = 0.0
Identities = 633/733 (86%), Gaps = 16/733 (2%)
Strand=Plus/Plus
Query 85 GGTTGTTGTTCGGCAACGGTCCACATAGTGGGAGGCTCCGATGGATGGACCGCTAAGGA- 143
|||||||||||||| || ||| ||| |||||||| ||||||||||||||| || |||||
Sbjct 283 GGTTGTTGTTCGGCCACCGTCTACAAAGTGGGAGACTCCGATGGATGGACTGCCAAGGAC 342
Query 144 -A-GACGA-CACC--TGGACCGACCG-TCCCGAGTA-CCACGTGGGAGATTCCCTGATCT 196
| | | ||| |||||||| | | ||| | ||||||||||||||| ||||||
Sbjct 343 CACCTCTATTACCATTGGACCGA-GGATAAAGAG-ATCCACGTGGGAGATTCTTTGATCT 400
Query 197 TTGAATATGATCGTAACTTGAGCGATGTTACTCAAGTTTCCGGCGGTTTGGAGTACGAAT 256
| ||||| |||| ||| | | || || || ||||| ||||| |||||||| |||||||
Sbjct 401 TCGAATACGATCACAACCTCAATGACGTCACACAAGTCTCCGGTGGTTTGGAATACGAAT 460
Query 257 TCTGCGACTCTTCTTTCCCTAAAGCCGTCTACAACACAGGCCACGATGTTGTAACTTTGA 316
|||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| || |
Sbjct 461 TCTGCGACTCTTCTTTTCCTAAAGCCGTCTACAACACAGGACATGATGTCGTAACCTTCA 520
Query 317 AGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATCGGGACAGA 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATCGGGACAGA 580
Query 377 AGCT-GGACGTTCTTGTTACCCATGACCCGTCGAGTCCGATTCCTCCAAAA-TCACCGAG 434
||| || |||| |||| |||||||||||||||||||| ||||| | | | ||||||
Sbjct 581 GGCTTGG-CGTTTTTGTCGTCCATGACCCGTCGAGTCCGAGTCCTCTACCACT-ACCGAG 638
Query 435 CAAGATTCTTCCGTCTGGAAATATCTACAAGGTAGGCGACTCCAAAAGATGGAGCGTTTA 494
||||||| |||| ||| || || |||||||||| || ||||||||||| ||| |||||||
Sbjct 639 CAAGATTATTCCTTCTAGACATGTCTACAAGGTTGGTGACTCCAAAAGTTGGGGCGTTTA 698
Query 495 CGACAGTGAGTTCTATTACCAGTGGAGTAAAGAGAAACAGTTCCATGTTGGAGACAGTCT 554
||||||||| ||||||||| | ||||||||||||||||||||| |||| |||||| ||||
Sbjct 699 CGACAGTGATTTCTATTACAACTGGAGTAAAGAGAAACAGTTCAATGTCGGAGACGGTCT 758
Query 555 CCTTTTCGAATACAACAACAAAGTCAATGATGTCTTCGAGATCAGCGGCGACCTTGAATT 614
|||||||||||||||||| ||||||| | ||||| |||||||||||| |||||||||||
Sbjct 759 CCTTTTCGAATACAACAATGAAGTCAACGGTGTCTACGAGATCAGCGGTGACCTTGAATT 818
Query 615 CCTATACTGCGACCCGATTTCTCCCGTAGCCGTGCACAAGACAGGCCACGATCTCGTCAA 674
| || |||||||||||| |||||| |||||||||| ||||||||||||||| || ||||
Sbjct 819 CTTAAACTGCGACCCGACTTCTCCAATAGCCGTGCATAAGACAGGCCACGATATCATCAA 878
Query 675 GCTCACCGAACCAGGAATCCATTATTTCATTAGCTCAGAACCAGGTCACTGTGAGGCTGG 734
||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 879 GCTCACCAAACCAGGAATCCATTATTTCATTAGCTCAGAACCGGGTCACTGTGGGGCTGG 938
Query 735 ACTTAAGCTCCAAGTTGTGGTTGGACCAACAGC-CAATGTTCCAAAGTTGTCACCTTTAG 793
|||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||||||
Sbjct 939 TCTTAAGCTCCAAGTCGTGGTCGGAACAACA-CTCAATGTTCCAAAGTTGTCACCTTTAG 997
Query 794 AACGTCTCACAAG 806
| |||||||||||
Sbjct 998 AGCGTCTCACAAG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5