BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942583

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 a...   268    1e-71


> AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 
and DUF3411) | chr3:20829282-20832871 FORWARD LENGTH=2565
Length=2565

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 161/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  8    GTGGGAGAAGCTGATGAATGCCAGAGCTGTGTACCTCGGTGAGGCGGGGCAAGTGCCTAC  67
            ||||||||||||| |||| || |||| |||||||||||||||||||| ||||||||||||
Sbjct  581  GTGGGAGAAGCTGTTGAACGCGAGAGTTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTAC  640

Query  68   CAAAGACGACAAAGAGCTTGAACTCGAAATCGTTAGAAACTTGAGGAAGAGATGCGTTGA  127
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  641  CAAAGACGACAAAGAGCTTGAACTCGAAATCGTTAGAAACCTGAGGAAGAGATGCGTTGA  700

Query  128  GAGCGAGCGTCAAATATCTGTAGCACTGGAAGCATTCCCTTTCGATTTG  176
            ||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct  701  GAGCGAGCGTCAAATCTCTGTAGCACTGGAAGCATTCCCTCTCGATTTG  749



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5