BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942584
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:... 261 3e-69
AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:... 239 1e-62
> AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:5657276-5657665
REVERSE LENGTH=282
Length=282
Score = 261 bits (141), Expect = 3e-69
Identities = 240/287 (84%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 21 ATGAAGACAATTATTTTGTTTTTAACTTTTCTGGTCCTTT-TGTCCTCATGTACATCAAT 79
||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||| ||
Sbjct 1 ATGAAGACAATTATTTTGTTTTTAACTCTTCTAGTCATTTCT-TCCTCATGTACATCGAT 59
Query 80 AATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATCAGCGAGC 137
||||| ||||| | | |||| | |||||| ||||| |||||| | |||| ||| |||
Sbjct 60 AATTA-CCAAAACA-ATGAATTCAAAAGAGACAACATATCTTGATAGTCCAGCAGTGAGT 117
Query 138 CCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACATTCTCTTCGTCAAGGCGT 196
|||||||| |||| ||| |||||||||||||||||| || || ||| ||| |||||||||
Sbjct 118 CCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAGGCGT 176
Query 197 AATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT-CGTA 255
|||| ||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 177 AATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTTGC-TA 235
Query 256 GTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 302
| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 236 GGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
> AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:5673818-5674220
REVERSE LENGTH=282
Length=282
Score = 239 bits (129), Expect = 1e-62
Identities = 229/276 (83%), Gaps = 12/276 (4%)
Strand=Plus/Plus
Query 21 ATGAAGACAATTATTTTGTTTTTAACTTTTCTGGTCCTTT-TGTCCTCATGTACATCAAT 79
||||||| || |||||||||||||||| |||| || |||| | |||||||||||||| ||
Sbjct 1 ATGAAGATAACTATTTTGTTTTTAACTCTTCTAGTTCTTTCT-TCCTCATGTACATCGAT 59
Query 80 AATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATCAGCGAGC 137
||||| ||||| | | |||| | |||||| || || |||||| || ||| | | |||
Sbjct 60 AATTA-CCAAAACA-ATGAATTCAAAAGAGACAATATATCTTGATAACCCAGCCGTGAGT 117
Query 138 CCTTCAATGGATCAAATTCTAGTGGATATACATCTTGGACATTCTCTTCG-TCAAGGCGT 196
|||||||| ||||||| ||||||||||||||||||||| || ||| || | |||||||||
Sbjct 118 CCTTCAATTGATCAAAATCTAGTGGATATACATCTTGGGCACTCT-TTTGTTCAAGGCGT 176
Query 197 AATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT-CGTA 255
|||| ||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 177 AATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTTGC-TA 235
Query 256 GTTGT-ACAAGATTTAAATGTCGTTGCAGTATTAGT 290
| ||| | ||| ||| |||||||||| ||| |||
Sbjct 236 GGTGTCAAAAG-TTTGTTTGTCGTTGCACTATCAGT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14979789202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5