BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942587

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08869.1 | Symbols:  | Putative membrane lipoprotein | chr4:...   169    1e-41
  AT4G08875.1 | Symbols:  | Putative membrane lipoprotein | chr4:...   163    5e-40


> AT4G08869.1 | Symbols:  | Putative membrane lipoprotein | chr4:5657276-5657665 
REVERSE LENGTH=282
Length=282

 Score =  169 bits (91),  Expect = 1e-41
 Identities = 151/180 (84%), Gaps = 4/180 (2%)
 Strand=Plus/Plus

Query  2    TCCATCAGCGAGCCCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACAGTCTC  60
            |||| ||| ||| |||||||| |||| ||| |||||||||||||||||| || || ||| 
Sbjct  105  TCCAGCAGTGAGTCCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTT  163

Query  61   TTCGTCAAGGCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTA  120
            ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  TTCTTCAAGGCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTA  223

Query  121  AGTATATT-CGTAGTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA  179
            |  || || | ||| |||| || ||||   |||||||||| ||  ||||  || ||||||
Sbjct  224  AAAATCTTGC-TAGGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA  282


> AT4G08875.1 | Symbols:  | Putative membrane lipoprotein | chr4:5673818-5674220 
REVERSE LENGTH=282
Length=282

 Score =  163 bits (88),  Expect = 5e-40
 Identities = 137/160 (86%), Gaps = 6/160 (4%)
 Strand=Plus/Plus

Query  11   GAGCCCTTCAATGGATCAAATTCTAGTGGATATACATCTTGGACAGTCTCTTCG-TCAAG  69
            ||| |||||||| ||||||| ||||||||||||||||||||| || ||| || | |||||
Sbjct  114  GAGTCCTTCAATTGATCAAAATCTAGTGGATATACATCTTGGGCACTCT-TTTGTTCAAG  172

Query  70   GCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT-  128
            |||||||| |||||||||||||||||||||||||||||||||||||||||||  || || 
Sbjct  173  GCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTTG  232

Query  129  CGTAGTTGT-ACAAGATTTAAATGTCGTTGCAGTATTAGT  167
            | ||| ||| | ||| |||   |||||||||| ||| |||
Sbjct  233  C-TAGGTGTCAAAAG-TTTGTTTGTCGTTGCACTATCAGT  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8853037776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5