BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942596
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08210.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2985 0.0
> AT4G08210.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:5183813-5185873 REVERSE LENGTH=2061
Length=2061
Score = 2985 bits (1616), Expect = 0.0
Identities = 1919/2065 (93%), Gaps = 22/2065 (1%)
Strand=Plus/Plus
Query 23 ATGGCTATGGACTTGAAGCTTATAGCAGCAGGATTACGTCATTGTGGGAAAATACAAGCT 82
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGTTATGGACTTGAAGCTTATAGCAGCAGGATTACGTCATTGTGGGAAAGTACAAGCC 60
Query 83 TTTAAGCGTGGAGAATCAATTCAAGCTCATATAATCAAACAAGGGATCTCTCAAAATGTG 142
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 61 TTTAAGCGTGGAGAATCAATTCAAGCTCATGTAATCAAGCAAGGGATCTCTCAAAATGTG 120
Query 143 TTTCTGGCGAATAATGTGATCTCAATGTATGTTGATTTTAGGTTGTTGAGTGATGCACAT 202
||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 TTTATAGCGAATAACGTGATCTCAATGTATGTGGATTTCAGGTTGTTGAGTGATGCACAT 180
Query 203 AAAGTGTTCGATGAAATGACTGAGAGAAATATTGTCACTTGGACTACGATGGTTTCTGGG 262
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 AAAGTGTTCGATGAAATGTCTGAGAGAAATATTGTAACTTGGACAACGATGGTTTCTGGG 240
Query 263 TATACTTGTGATGGAAAACCCAGTAAGGCTATTGAGTTATACAGAAGAATGGTGGAATCT 322
||||| ||||||||||||||| ||| |||||||||||||||||||||||| | || ||
Sbjct 241 TATACGAGTGATGGAAAACCCAATAAAGCTATTGAGTTATACAGAAGAATGTTAGACTC- 299
Query 323 C-AAGAAGAAGCGGCTAACGAGTTTATGTATTCTGCGGTTTTGAAAGCGTGTGGGTTAGT 381
| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 CGAAGAAGAAGCGGCGAACGAGTTTATGTATTCTGCGGTTTTGAAAGCTTGTGGGTTAGT 359
Query 382 GGGTGATATTCAGTTGGGGAGTTTGGTTTATGAAAGAATTGGTAAAGAGAATCTT-AAAG 440
||||||||||||| |||||| ||||||||||||||||||||||||||||||| || | ||
Sbjct 360 GGGTGATATTCAGCTGGGGATTTTGGTTTATGAAAGAATTGGTAAAGAGAAT-TTGAGAG 418
Query 441 GTGATGTTGTTTTGATGAATAGTGTTGTAGATATGTTTGTTAAGAATGGGAGACTTAGT- 499
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 419 GTGATGTTGTTTTGATGAATAGTGTTGTTGATATGTATGTTAAGAATGGGAGACTTA-TC 477
Query 500 GAAGCTAATAGCTCTTTTAAGGAGATTTTACGGCCTAATTCGACTTCGTGGAACACTCTT 559
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 GAAGCTAATAGCAGTTTTAAGGAGATTTTACGGCCTAGTTCGACTTCGTGGAACACTCTT 537
Query 560 ATTTCTGGTTATTGTAAAGCAGGTATGGTTGAGGAGGCGGTTAGTTTGTTTAATCGAATT 619
|||||||||||||||||||| ||| || | || || ||||||| |||||| |||||||
Sbjct 538 ATTTCTGGTTATTGTAAAGCTGGTTTGATGGATGAAGCGGTTACTTTGTTCCATCGAATG 597
Query 620 CCGCAGCCAAATATTGTGTCTTGGAACTGTTTGATCTCGGGATTTGTCGATAAGGGTAGT 679
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 CCGCAGCCAAATGTCGTGTCTTGGAACTGTTTGATATCGGGATTTGTCGATAAGGGTAGT 657
Query 680 CCTCGTGCGTTGGAGTTTCTGGTTAGGATGCAGAGAGAAGGACTTGTGTTAGACGGTTTT 739
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCTCGTGCGTTGGAGTTTTTAGTTAGGATGCAGAGAGAAGGACTTGTGTTAGACGGTTTT 717
Query 740 GCTTTACCTTGTGGTCTTAAAGCTTGCAGTTTTGGTGGCTTATTAACAATGGGTAAACAA 799
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 GCTTTACCATGTGGTCTTAAAGCTTGTAGTTTTGGTGGCTTATTAACAATGGGTAAACAG 777
Query 800 CTGCATGGCTGTGTCGTAAAGTCGGGTCTGGAGTCTAGCCCGTTCGCACTCTCTGCTCTT 859
|||||| | |||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 778 CTGCATTGTTGTGTCGTAAAGTCGGGTCTAGAGTCTAGCCCGTTCGCAATATCTGCTCTT 837
Query 860 ATTGATATGTACTCGAACTGTGGCTCTCTAAGT-GATGCAGCTGATGTTTTTCATCAGGA 918
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 838 ATTGATATGTACTCGAACTGTGGCTCTCTAA-TATATGCAGCTGATGTTTTTCATCAGGA 896
Query 919 AAAGCCGGCCCTCT-GTAATACTGTTGCGGTTTGGAATTCTATGCTCTCTGGATTTTTGA 977
||| | |||| | | || || ||| ||||||||||||||||||||||||||||||||||
Sbjct 897 AAAACTGGCCGT-TAATAGTAGTGTCGCGGTTTGGAATTCTATGCTCTCTGGATTTTTGA 955
Query 978 TTAACGAAGAGAATGAAGCGGCATTAGGGCTGCTTTTGCAGATGTA-CAAGTCAGATTTG 1036
| || || ||||||||||| |||||| |||||||||||||||| || | |||||||||||
Sbjct 956 TAAATGAGGAGAATGAAGCAGCATTATGGCTGCTTTTGCAGATATATC-AGTCAGATTTG 1014
Query 1037 TGTTTTGATTCCTACACTCTAAGTGGTGCCTTAAAGATATGCATCAACTTA-GTCAACTT 1095
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1015 TGTTTTGATTCCTACACTCTAAGTGGTGCCTTAAAGATATGTATCAAC-TATGTCAACTT 1073
Query 1096 AAGACTCGGGCTTCAGGTACATAGTTTAGTTGTAGTCAGTGGTTATGAGTTGGATTACAT 1155
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1074 AAGACTCGGGCTTCAAGTACATAGTTTAGTTGTAGTAAGTGGTTATGAGTTGGATTACAT 1133
Query 1156 TGTAGGAAGCATTCTTGTTGATTTACACGCAAACGTTGGGAATATACAAGAAGCACATAA 1215
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1134 CGTAGGAAGTATTCTTGTTGATTTACATGCAAATGTTGGGAATATACAAGATGCACATAA 1193
Query 1216 GCTGTTTCATAGGCTTCCAAATAAAGATATCATCGCTTTCTCTGGCTTGATAAGAGGCTG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1194 ACTGTTTCATAGGCTTCCAAATAAAGATATCATCGCTTTCTCTGGCTTGATACGAGGCTG 1253
Query 1276 TGTGAAATCAGGATTCAATTCTTCAGCATTTTATCTGTTCAGGGAATTAATCAAGTTGGG 1335
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGTGAAATCAGGGTTCAATTCTTTAGCATTTTATCTGTTCAGGGAATTAATCAAGTTGGG 1313
Query 1336 ACTCGATGCCGACCAGTTTATCGTCTCAAGTATTCTCAAAGTCTGTTCAAGTTTAGCGTC 1395
||||||||| |||||||| |||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 1314 ACTCGATGCTGACCAGTTCATCGTCTCAAATATTCTTAAAGTTTGTTCAAGTTTAGCATC 1373
Query 1396 TCTTGGATGTGGTAAGCAAATTCATGGGTTGTGTATAAAGAAAGGTTACCAATCAGAACC 1455
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1374 TCTTGGATGGGGTAAGCAAATTCATGGGTTGTGTATAAAGAAAGGTTATGAATCAGAACC 1433
Query 1456 TGTTACAGCGACAGCACTAGTAGATATGTATGTAAAATGTGGTGAGATAGACAATAGTGT 1515
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1434 TGTCACAGCGACAGCACTAGTAGATATGTATGTAAAATGTGGTGAGATAGATAATGGTGT 1493
Query 1516 AGTGTTGTTTGATGGTATGTTGGAAAGAGATGTTGTCTCTTGGACGGGGATAATTGTGGG 1575
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 1494 AGTGTTGTTTGATGGTATGTTAGAAAGAGATGTTGTCTCTTGGACAGGGATAATTGTTGG 1553
Query 1576 ATTTGGACAAAACGGACGAGTCGAAGAAGCGTTTCAGTATTTCCACAAGATGATCAAT-T 1634
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1554 ATTCGGACAAAACGGACGAGTCGAAGAAGCGTTTCGGTATTTCCACAAGATGATAAATAT 1613
Query 1635 CTGAGA-TTGAACCAAATGAGGTAACTTTTTTGGGGCTTCTTTCTGCTTGCCGACATTCT 1693
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 -TG-GAATTGAACCAAATAAGGTAACTTTTTTGGGGCTTCTTTCTGCTTGCCGACATTCT 1671
Query 1694 GGACTGCTTGAAGAAGCAAGATCAATCCTCGAAACGATGAAATGTGAATATGGTCTTGAA 1753
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1672 GGACTACTTGAAGAAGCAAGATCAACCCTCGAAACGATGAAATCTGAATATGGTCTTGAA 1731
Query 1754 CCGTATCTAGAGCATTATTATTGCGTAGTTGATCTTCTTGGTCAAGCTGGGCGGTTCCAA 1813
||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1732 CCGTATCTAGAGCATTATTATTGTGTAGTTGATCTTCTTGGTCAAGCCGGGCTGTTCCAA 1791
Query 1814 GAGGCAGAA-GAATTGATAAAGAAAATGCCTTTAGAACCCGATAAAACAATATGGATGTC 1872
||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| |||
Sbjct 1792 GAGGCT-AACGAATTGATAAATAAAATGCCGTTGGAGCCCGACAAAACAATATGGACGTC 1850
Query 1873 TCTGCTCACTGCTTGCGGAACTCACAAGAATGCGGGACTGATTACTGTAATTGCTGAGAA 1932
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1851 TCTGCTCACTGCTTGCGGAACTCACAAGAATGCCGGACTGGTTACTGTAATTGCTGAGAA 1910
Query 1933 ATTGCTCAAGGCATTTCCGGAAGATCCATCG-TTGTATACATCTCTTTCCAATGCTTATG 1991
||| ||||||| |||||||| ||||||||| || |||||||||||||| ||||||||||
Sbjct 1911 ATTACTCAAGGGGTTTCCGGATGATCCATCGGTT-TATACATCTCTTTCGAATGCTTATG 1969
Query 1992 CTACGTTGGGCATGTGGGATCAGTTAAGTGAAGTGAGAGAAGCCGCTAAGAAGTTAGGGG 2051
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 1970 CTACGTTAGGCATGTGGGATCAGTTAAGTAAAGTGAGAGAAGCTGCTAAGAAGCTAGGGG 2029
Query 2052 CCAAAGAATCTGGAATGAGCTGGAT 2076
| ||||||||||||||||| |||||
Sbjct 2030 CAAAAGAATCTGGAATGAGTTGGAT 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104567735235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5