BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942611
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08250.1 | Symbols: | GRAS family transcription factor | ch... 2111 0.0
> AT4G08250.1 | Symbols: | GRAS family transcription factor |
chr4:5196787-5198238 FORWARD LENGTH=1452
Length=1452
Score = 2111 bits (1143), Expect = 0.0
Identities = 1351/1454 (93%), Gaps = 4/1454 (0%)
Strand=Plus/Plus
Query 27 ATGGATTATCCTTACGAGGACTTCTTGGACCTCTTCTTCTCTACCAACACCGACACGCTT 86
||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 1 ATGAATTATCCTTACGAGGACTTCTTGGACCTCTTCTTCTCTACCCACACTGACCCGCTT 60
Query 87 GCCACGGCTGCAAGTACCTCCTCTTGTGGTTATAGATTGAATGATCTTGACATTGATTGG 146
|||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 61 GCCACGGCTGCAAGCACCTCTTCGAATGGTTATAGCTTGAATGATCTTGACATTGATTGG 120
Query 147 GACTGTGACTTCCGCGATGTCATTGAATCCATTATGGGTGATGAAGGGGCCATGATGGAA 206
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GACTGTGACTTCCGTGATGTCATTGAATCCATTATGGGTGATGAAGGAGCCATGATGGAA 180
Query 207 CCTGAATCGGAATCTGTTCCAATGCTTCATGGCCAGGAGGGACTTTGTAACTCTGCGTCC 266
|| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CCGGAATCGGAAGCTGTTCCAATGCTTCATGACCAGGAGGGACTTTGTAACTCTGCGTCA 240
Query 267 ACGAGTTTATCCCTGGCTGATGGGGTTAGTGTAGAG-GAGCCTAAGACTGATGAATCAAA 325
||| |||| || ||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 241 ACGGGTTTGTCTGTGGCTGATGGGGTTAGTTTTG-GTGAGCCTAAGACTGATGAATCAAA 299
Query 326 GGGCTTGAGGTTGGTTCACTTACTGGTGGCTGCTGCAGAGGCGTCAACTGGTGCAAACAA 385
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 300 GGGCTTGAGGTTGGTTCACTTACTTGTGGCTGCTGCTGATGCGTCAACTGGTGCGAACAA 359
Query 386 GTCGCGGGAGTTAACTCGAGTTATACTTGCAAGGCTTAAGGACTTGGTTTCTCCTGGTGA 445
||| | ||| ||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 360 GTCTAGAGAGCTAACTCGGGTTATACTTGCAAGGCTTAAAGATTTGGTTTCTCCTGGTGA 419
Query 446 CCGAACTAACATGGAGAGATTAGCTGCCCACTTCACCAATGGGCTTTCAAAATTGTTCGA 505
|||||||||||||||||| |||||||| ||||||||||| || |||||||| ||| ||||
Sbjct 420 CCGAACTAACATGGAGAGGTTAGCTGCTCACTTCACCAACGGACTTTCAAAGTTGCTCGA 479
Query 506 ACGAGATATTGTTCTGCGTCCCCAACAACATCGTGATGATGTTTATGATCAGGCGGATGT 565
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 ACGAGATAGTGTTCTGTGTCCCCAACAACATCGTGATGATGTCTATGATCAGGCGGATGT 539
Query 566 GATCTCGGCGTTCGAACTGCTACAGAACATGTCTCCGTATGTCAACTTTGGTTACCTTAC 625
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 540 GATCTCAGCGTTCGAACTGCTGCAAAACATGTCTCCATATGTCAACTTTGGTTACCTCAC 599
Query 626 GGCCACACAAGCTATTCTAGAAGCTGTGAAGTATGAGCGTCGAATCCATATAGTGGACTA 685
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 600 TGCCACACAGGCTATTCTTGAAGCTGTGAAGTATGAACGTCGAATCCATATAGTGGATTA 659
Query 686 CGATAT-AACTGAAGGCGTTCAGTGGGCTTCATTGATGCAGGCCTTGGTGTCTAAAAATA 744
|||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 660 CGATATCAA-TGAAGGCGTTCAGTGGGCTTCATTGATGCAAGCCTTGGTGTCTAGAAATA 718
Query 745 CAGGCCCATCAGCCCAACATCTTAGGATCACGGCTTTGTCACGAGCCACCAACGGTAAAA 804
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 719 CAGGCCCGTCAGCCCAACATCTTAGAATCACGGCTTTGTCACGAGCAACAAACGGTAAAA 778
Query 805 AATCCATTGCTGCAGTTCAAGAGACTGGGCGGCGTCTAACTGCGTTTGCCGAGTCTATCG 864
||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 AATCCGTGGCTGCAGTCCAAGAGACTGGGCGGCGTCTAACTGCGTTTGCCGATTCTATCG 838
Query 865 GCCAGCCATTTTCATATCACCACTGTAAACTCGACACCAATGCATTCAGCACATCATCCT 924
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 839 GCCAGCCATTTTCATATCAACACTGTAAACTTGACACCAATGCATTCAGCACATCATCTT 898
Query 925 TGAAACTTGTAAGAGGAGAAGCAGTGGTAATCAATTGTATGTTGCATCTTCCACGGTTTA 984
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 TGAAACTTGTAAGAGGAGAAGCAGTGGTAATCAATTGTATGTTGCATCTTCCTCGGTTTA 958
Query 985 GAAACCAAACACCCAATTCTGTCATTTCCTTTTTATCAGAAGCTAAAACTCTAAACCCGA 1044
| |||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 959 GTCACCAAACACCCAGTTCAGTCATTTCCTTTTTGTCGGAAGCTAAAACTCTAAACCCGA 1018
Query 1045 AACTTGTCACGCTTGTTCACGAGGAAGTTGGTCTAATGGGGAACCAAGGTTTCCTATATC 1104
||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct 1019 AACTTGTTACGCTTGTTCACGAAGAAGTTGGTCTGATGGGAAACCAAGGTTTTCTATATC 1078
Query 1105 GTTTTATGGACTTGCTACATCAGTTCTCAGCCATATTCGACTCTCTAGAAGCAGGCCTTT 1164
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 GTTTTATGGACTTGCTACATCAGTTCTCAGCCATATTCGACTCTCTAGAGGCAGGCCTTT 1138
Query 1165 CAATCGCTAACCCGGCCCGTGGCTATGTTGAGCGTGTTTTTATCGGCCCGTGGGTTGCTA 1224
|||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 1139 CAATCGCTAACCCGGCCCGTGGCTTTGTTGAGCGTGTTTTTATCGGTCCTTGGGTTGCTA 1198
Query 1225 ATTGGTTGACGCGTATCACCGCTGATGATGCAGAAGTCGAGAGCTTAGCTTCGTGGCCAC 1284
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1199 ATTGGTTGACGCGTATCACCGCTAATGATGCAGAAGTCGAGAGCTTTGCTTCGTGGCCAC 1258
Query 1285 AGTGGTTAGAGACTAATGGGTTCAAACCAATGGAAGTGAGCTTTGCCAACCGTTGTCAAG 1344
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1259 AGTGGTTAGAGACTAATGGGTTCAAACCCTTGGAAGTGAGCTTTACCAACCGTTGTCAAG 1318
Query 1345 CAAAGCTCCTTTTGAGCTTGTTTAATGATGGGTATATAGTGGAAGAATTGGGCCAAAACG 1404
|||| ||||||||||| |||||||||||||| | || |||||||||||||||||||||||
Sbjct 1319 CAAAACTCCTTTTGAGTTTGTTTAATGATGGATTTAGAGTGGAAGAATTGGGCCAAAACG 1378
Query 1405 GGCTAGTTTTGGGATGGAAATCTCGGCGTCTTGTCTCGGCCTCGTTTTGGGCCTCCCACG 1464
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1379 GGCTCGTTTTGGGATGGAAATCTCGGCGTCTTGTGTCGGCCTCCTTTTGGGCCTCGTGCC 1438
Query 1465 AGTCGAATCAGTAA 1478
|| |||||||||||
Sbjct 1439 AGACGAATCAGTAA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5