BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942615
Length=349
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07030.1 | Symbols: | transposable element gene | chr2:2913... 207 4e-53
> AT2G07030.1 | Symbols: | transposable element gene | chr2:2913629-2914781
FORWARD LENGTH=1153
Length=1153
Score = 207 bits (112), Expect = 4e-53
Identities = 202/242 (83%), Gaps = 19/242 (8%)
Strand=Plus/Minus
Query 1 TCTTCGTAAACACTAGAATCATGAGAATCATAGCCTACTTCCTCCTCGTTTACTATCTCC 60
||||| | ||||||||||||||||| |||||| ||| || ||||||| ||||||||||||
Sbjct 223 TCTTCATCAACACTAGAATCATGAG-ATCATATCCTTCTCCCTCCTCATTTACTATCTCC 165
Query 61 TCTGCAACTCCATCACCTATACCTCCATCTTCTGCAACTCCACGCTCTGCAACCCCGTTG 120
||| ||||||||||||||||| |||||||||||||||||||| | | | |
Sbjct 164 TCTACAACTCCATCACCTATATCTCCATCTTCTGCAACTCCA----C-G------C--T- 119
Query 121 CTTGCAACTCCATCGCCTCCAACTATTTCGGATTCATCTTGATCAGCGGCTTCAACTCTC 180
|||||||||||||||||||||||||||||| | || | |||| |||||||| || |
Sbjct 118 -TTGCAACTCCATCGCCTCCAACTATTTCGGGTGCAACATGAT---TGGCTTCAATTCCC 63
Query 181 TCAGGTTCAATTTGGGATTTACCATCCCTTCGAATTGGAAGCTTTCTCCTTCGTCTATTC 240
||| ||| |||||||| || |||||| |||||||||||||||||||||||| ||||||||
Sbjct 62 TCACGTTGAATTTGGGCTTCACCATCTCTTCGAATTGGAAGCTTTCTCCTTTGTCTATTC 3
Query 241 AT 242
||
Sbjct 2 AT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16337018425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5