BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942641
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08520.1 | Symbols: | SNARE-like superfamily protein | chr4... 942 0.0
AT3G09800.1 | Symbols: | SNARE-like superfamily protein | chr3... 689 0.0
> AT4G08520.1 | Symbols: | SNARE-like superfamily protein | chr4:5417348-5420530
FORWARD LENGTH=843
Length=843
Score = 942 bits (510), Expect = 0.0
Identities = 555/577 (96%), Gaps = 1/577 (0%)
Strand=Plus/Plus
Query 12 TCAACAACAATGGCAGGGACTAATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTA 71
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 TCAAAAACAATGGCAGGGACTAATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTA 113
Query 72 GACTCTGAAGGAAAGCGTGTGGCTGTCAAGTATTACTCAGATGATTGGACAACTAATGCT 131
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 114 GACTCTGAAGGAAAGCGTGTGGCTGTCAAGTATTACTCCGATGATTGGGCAACTAATGCT 173
Query 132 GCCAAGTTAGCTTTTGAAAAATATGTATTCTCGAAGACCTCTAAAACCAATGCTCGCACA 191
||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct 174 TCCAAGTTAGCTTTTGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACA 233
Query 192 GAAGCGGAGATCACACTGTTGGAGAATAATATTGTTGTCTATAAGTTTGCCCAGGATCTG 251
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 234 GAAGCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGGACCTG 293
Query 252 CATTTCTTTGTTACCGGAGGTGAAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAA 311
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CATTTCTTTGTTACTGGAGGTGAAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAA 353
Query 312 GGCTTTTTTGATGCTGTTGCATTACTTCTGAGGAACAATGTTGAAAAGATGGAAGCCCTT 371
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGCTTTTTTGATGCTGTTGCGTTACTTCTGAGGAACAATGTTGAAAAGATGGAAGCCCTT 413
Query 372 GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTTCTC 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTACTT 473
Query 432 GAAACAGATGCCAATGTTATTGCGGGAAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGT 491
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 474 GAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGT 533
Query 492 TCACTCTCTGAACAGACGTTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCAAGA 551
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 534 TCACTCTCTGAACAGACATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGA 593
Query 552 AGTCTTCTTACATAA-TTTTCATCGTGGGAGAGAAAT 587
||||||||||||||| ||||||||||||||| |||||
Sbjct 594 AGTCTTCTTACATAAATTTTCATCGTGGGAGCGAAAT 630
> AT3G09800.1 | Symbols: | SNARE-like superfamily protein | chr3:3006515-3008489
REVERSE LENGTH=920
Length=920
Score = 689 bits (373), Expect = 0.0
Identities = 490/547 (90%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 35 TGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGC 94
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 173 TGATTCTTGTCCTTTGGTAAAGAAGATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGC 232
Query 95 TGTCAAGTATTACTCAGATGATTGGACAACTAATGCTGCCAAGTTA-GCTTTTGAAAAAT 153
||||||||||||||| ||||| ||| |||||||||| ||||||||| | |||||| || |
Sbjct 233 TGTCAAGTATTACTCGGATGACTGGCCAACTAATGCCGCCAAGTTAAG-TTTTGAGAAGT 291
Query 154 ATGTATTCTCGAAGACCTCTAAAACCAATGCTCGCACAGAAGCGGAGATCACACTGTTGG 213
|||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 292 ATGTATTCTCAAAGACCTCTAAGACCAATGCTCGTACAGAAGCTGAGATCACACTGTTGG 351
Query 214 AGAATAATATTGTTGTCTATAAGTTTGCCCAGGATCTGCATTTCTTTGTTACCGGAGGTG 273
| | |||||| |||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct 352 ACAGCAATATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGAGGTG 411
Query 274 AAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCA- 332
||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 412 AAAATGAAAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCAC 471
Query 333 TTACTTCTGAGGAACAATGTTGAAAAGATGGAAGCCCTTGAAAACTTGGATCTCATCTTT 392
|| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 472 TT-CTTCTGAGGAGCAATGTGGAAAAGATGGAAGCCCTTGAGAACTTGGATCTCATCTTT 530
Query 393 TTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTTCTCGAAACAGATGCCAAT-GTTAT 451
| ||||||||||| ||||| ||||||||| ||||||| ||||| ||| |||| || ||
Sbjct 531 CTATGCCTTGATGAAATGGTCGATCAAGGGGTGGTTCTTGAAACGGAT-CCAAACGTCAT 589
Query 452 TGCGGGAAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAGACGTT 511
|||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
Sbjct 590 TGCGGGGAAAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGACACT 649
Query 512 AACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCAAGAAGTCTTCTTACATAATTTTC 571
||| ||||| | ||||||||||||||||| || ||||||||||| ||||||| | || |
Sbjct 650 AACACAAGCGCTAGCAACAGCTCGGGAGCATCTGGCAAGAAGTCTGCTTACATGAGTTCC 709
Query 572 ATCGTGG 578
||| |||
Sbjct 710 ATCATGG 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5