BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942649

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01660.1 | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter ...   222    1e-57


> AT4G01660.1 | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter 
1 | chr4:708544-711256 FORWARD LENGTH=2141
Length=2141

 Score =  222 bits (120),  Expect = 1e-57
 Identities = 166/188 (88%), Gaps = 4/188 (2%)
 Strand=Plus/Plus

Query  1    TTAAAGAATCTATC-TATAGGATGGTAAATGGGACACCAATGACACAAGACAATCAACCT  59
            |||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  692  TTAAAGAATCTA-CGTATAGGATGGTAAATGGGACACCAATGACACCAGACAATCAGCCT  750

Query  60   GCAGT-ATCTTCTTTCATGTCTAATGAAAGTGCAGAAACATTAGCTCTTGGATTATGTGA  118
            || || ||| ||||| |||||||| |||| ||| |||| ||| ||||||||||| |||||
Sbjct  751  GC-GTTATCGTCTTTGATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGA  809

Query  119  AATGCGTGGAGCTGCTCTTAAATTTGGGAAAATATTGAGTATACATGATGAGGGTCTTGT  178
            |||||||||||||||||||||| ||||  |||| ||||||||||| || ||| |||| ||
Sbjct  810  AATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGT  869

Query  179  TCCTGCTC  186
            ||||||||
Sbjct  870  TCCTGCTC  877



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5