BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942653
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08620.1 | Symbols: SULTR1;1 | sulphate transporter 1;1 | ch... 2944 0.0
> AT4G08620.1 | Symbols: SULTR1;1 | sulphate transporter 1;1 |
chr4:5500313-5506265 FORWARD LENGTH=2311
Length=2311
Score = 2944 bits (1594), Expect = 0.0
Identities = 1854/1981 (94%), Gaps = 12/1981 (1%)
Strand=Plus/Plus
Query 11 TTTCAACAATCATGTCCGGGAC--TT-AT---CCGGACGGAGGAGGGTCCGGTGCAAGAA 64
||||| |||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 68 TTTCAGCAATCATGTCCGGGACTATTAATCCCCCGGACGGAGGAGGGTCCGGTGCAAGAA 127
Query 65 ACCCAGCAGAAGTTCGTCAGCGAGTGCTAGCTCCTCCGAAAGCGGGTTTGCTAAAGGACA 124
||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 128 ACCCACCAGTCGTTCGTCAGAGAGTGCTAGCTCCTCCGAAAGCGGGTTTACTAAAGGACA 187
Query 125 TCAAGTCGGTGGTTGAAGAAACTTTCTTCCATGATGCACCCCTTAGGGATTTCAAGGGCC 184
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 188 TCAAGTCCGTGGTTGAAGAAACTTTCTTCCATGATGCTCCGCTTAGGGATTTCAAGGGCC 247
Query 185 AAACCCCAGCTAAGAAAGCGTTACTCGGGATCCAGGCTGTCTTCCCGATCATTGGTTGGG 244
||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 248 AAACCCCAGCTAAAAAAGCGTTGCTCGGGATCCAGGCTGTCTTCCCGATCATCGGGTGGG 307
Query 245 CCAGAGAGTACAATCTTCGCAAACTTCGAGGCGATGTAATTGCCGGTCTCACCATTGCTA 304
||||||| |||| |||||||||| || |||| ||| | || |||||||||||||||||||
Sbjct 308 CCAGAGAATACACTCTTCGCAAATTTAGAGGTGATCTCATCGCCGGTCTCACCATTGCTA 367
Query 305 GTCTTTGTATCCCTCAGGATATCGGATATGCAAAGCTCGCGAATTTGGATCCAAAATACG 364
|||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||
Sbjct 368 GTCTTTGTATCCCTCAGGATATCGGATATGCAAAACTCGCGAATGTCGATCCGAAATACG 427
Query 365 GACTTTACTCGAGTTTCGTGCCACCACTGGTGTACGCGGGCATGGGGAGTTCTAGAGATA 424
||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| ||||
Sbjct 428 GACTTTATTCGAGTTTCGTGCCACCGCTGATTTACGCGGGCATGGGGAGTTCTAGGGATA 487
Query 425 TTGCGATAGGACCAGTCGCGGTGGTGTCTCTTCTTTTGGGAACTTTGTGCCAGGCCGTCA 484
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 488 TTGCGATAGGACCAGTCGCTGTGGTGTCTCTTCTTGTGGGAACTTTGTGCCAGGCCGTGA 547
Query 485 TCGACCCAAAGAAAAACCCGGCTGATTATCTCCGACTTGCCTTCACTGCCACTTTCTTTG 544
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 548 TCGACCCAAAGAAAAACCCGGAGGATTATCTCCGACTTGTCTTCACTGCCACTTTCTTTG 607
Query 545 CTGGCATTTTCCAAGCCGGCCTCGGTTTTCTGCGGTTGGGATTCTTGATAGACTTTCTGT 604
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 608 CTGGCATTTTCCAAGCCGGCCTCGGATTTCTACGGTTGGGATTCTTGATAGACTTTCTGT 667
Query 605 CGCATGCTGCGGTTGTTGGGTTCATGGGAGGAGCAGCCATCACAATCGCTCTCCAACAGC 664
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CGCATGCGGCCGTGGTTGGGTTCATGGGAGGAGCAGCCATCACAATCGCTCTCCAACAGC 727
Query 665 TTAAGGGCTTTCTTGGCATCAAGACATTTACCAAGAAAACTGATATTATTTCTGTTATGA 724
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 728 TTAAGGGCTTTCTTGGCATCAAAACATTTACCAAGAAAACTGATATTGTTTCTGTCATGC 787
Query 725 AGTCCGTATTCAAAAACGCTGAGCATGGGTGGAATTGGCAAACTATAGTCATTGGCGCCA 784
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 ACTCCGTATTCAAAAACGCTGAGCATGGGTGGAATTGGCAAACTATAGTCATTGGCGCCA 847
Query 785 GTTTCTTGACCTTTCTTCTCGTCACCAAATTCATTGGGAAGAGAAACAGGAGACTTTTTT 844
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 848 GTTTCTTGACCTTTCTTCTCGTCACCAAATTCATTGGGAAGAGAAACAGGAAACTATTTT 907
Query 845 GGGTTCCAGCAATTGCTCCTCTTATTTCAGTCATTATCTCTACCTTCTTTGTCTTCATAA 904
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GGGTTCCGGCAATTGCGCCTCTTATTTCAGTCATTATCTCTACCTTCTTTGTCTTCATTT 967
Query 905 CTCGTGCTGACAAACAAGGAGTCCAAATTGTGAAACATATAGATCAAGGAATCAATCCGA 964
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TTCGTGCTGATAAACAAGGAGTCCAAATTGTGAAACATATAGATCAAGGAATCAATCCGA 1027
Query 965 TATCCGCTCATAAGATTTTCTTCTCCGGAAAATATTTGACCGAAGGAATCCGAATTGGAG 1024
| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1028 TTTCCGTTCATAAGATTTTCTTCTCCGGAAAATATTTCACCGAAGGAATCCGAATCGGAG 1087
Query 1025 GCATTGCTGGTATGGTCGCTTTAACGGAAGCTGTAGCGATTGCAAGAACATTTGCAGCAA 1084
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1088 GCATTGCGGGTATGGTCGCCTTAACGGAGGCTGTAGCGATTGCAAGAACATTTGCGGCAA 1147
Query 1085 TGAAAGACTATCAAATCGATGGAAACAAAGAGATGATTGCTTT-GGGAACTATGAACGTT 1143
|||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1148 TGAAAGACTATCAAATTGATGGAAACAAAGAGATGATTGCCCTAGGGA-CTATGAACGTC 1206
Query 1144 GTTGGTTCACTCACTTCTTGTTACATTGCCACGGGTTCGTTTTCACGATCTGCCGTGAAC 1203
|| |||||| | || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1207 GTCGGTTCAATGACCTCTTGTTACATTGCCACGGGTTCGTTTTCGCGATCTGCCGTGAAC 1266
Query 1204 TACATGGCGGGAGTCCAAACCGCGGTTTCAAACATAGTGATGGCCATAGTGGTAGCTCTA 1263
| ||||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1267 TTCATGGCGGGAGTCGAAACGGCGGTTTCAAACATAGTTATGGCCATAGTTGTAGCTCTA 1326
Query 1264 ACCTTAGAGTTCATCACACCACTCTTTAAATACACTCCAAATGCTATCCTCGCGGCCATC 1323
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1327 ACCTTAGAGTTCATCACACCACTCTTCAAGTACACTCCAAATGCTATCCTCGCGGCCATC 1386
Query 1324 ATTATATCGGCTGTCCTCGGTCTTATCGATATTGACGCTGCGATTCTTATATGGAGGATC 1383
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1387 ATTATATCGGCTGTCCTCGGTCTTATCGATATTGACGCAGCGATTCTCATATGGAGGATC 1446
Query 1384 GATAAACTCGACTTCTTGGCTTGCATGGGAGCATTCTTTGGAGTCATCTTCATCTCTGTT 1443
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1447 GATAAACTCGACTTCTTGGCTTGCATGGGAGCTTTCTTAGGAGTCATCTTCATCTCGGTT 1506
Query 1444 GAGATCGGGCTCTTGATCGCCGTGGTGATCTCTTTTGCAAAGATACTGCTGCAAGTGACG 1503
|||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 1507 GAGATCGGTCTCTTGATCGCTGTGGTGATCTCTTTTGCAAAGATATTGCTTCAAGTGACG 1566
Query 1504 AGACCAAGAACGACGATTCTAGGGAAGCTGCCAAATTCGAACGTGTATCGGAACACTCTA 1563
||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1567 AGACCAAGAACCACGGTTCTAGGGAAGCTGCCAAATTCGAATGTATATCGGAACACTCTA 1626
Query 1564 CAGTATCCGGACGCTGCTCAGATTTCCGGAATCTTGATCATCCGTGTTGACTCCGCCATC 1623
||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||
Sbjct 1627 CAGTATCCGGACGCTGCCCAAATTCCCGGAATCTTGATCATCCGTGTTGACTCGGCCATC 1686
Query 1624 TACTTTTCCAACTCCAACTATGTCCGAGAAAGGGCGTCAAGATGGGTGCGAGAGGAGCAA 1683
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1687 TACTTTTCCAACTCCAACTATGTCCGAGAAAGGGCATCAAGATGGGTGCGAGAGGAGCAA 1746
Query 1684 GAAAACGCTAAAGAAGAGGGCAGGCCGGCAATCAAATTTGTGATTATTGAGATGTCACCT 1743
||||| ||||| ||| | |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1747 GAAAATGCTAAGGAATATGGCATGCCGGCAATCAGATTTGTGATTATTGAGATGTCACCG 1806
Query 1744 GTTACCGATATCGATACCAGTGGTATTCACTCCATCGAAGAACTTCTCAAGAGCCTCGAG 1803
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1807 GTTACCGATATCGATACCAGTGGTATCCACTCCATCGAAGAACTTCTCAAGAGCCTCGAG 1866
Query 1804 AAGCAAGAGATTCAGTTGATTCTAGCAAATCCTGGACCAGTGGTGATTGAGAAACTTTAT 1863
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1867 AAGCAAGAAATTCAGTTGATTCTAGCAAATCCAGGACCAGTGGTGATTGAGAAACTTTAT 1926
Query 1864 GCTTCCAAGTTCGTCGAGGAGATTGGAGAGAAAAATATCTTCCTTACTGTTGGCGACGCG 1923
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 GCTTCAAAGTTCGTCGAGGAGATTGGAGAGAAAAATATCTTCCTTACTGTTGGCGACGCG 1986
Query 1924 GTGGCAGATTGTGTTCCAAG-AT-TGGCTGAACAACAAGCTTAATAGCGTTTATTCATAT 1981
|| |||| || ||||| | | | ||||||| |||||| ||||||| ||| |||||||||
Sbjct 1987 GTCGCAG-TT-TGTTCTACGGAAGTGGCTGAGCAACAAACTTAATATCGTCTATTCATAT 2044
Query 1982 A 1982
|
Sbjct 2045 A 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98342867655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5