BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942659
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08700.1 | Symbols: ATPUP13 | Drug/metabolite transporter su... 654 0.0
AT5G41160.1 | Symbols: ATPUP12, PUP12 | purine permease 12 | ch... 603 8e-172
> AT4G08700.1 | Symbols: ATPUP13 | Drug/metabolite transporter
superfamily protein | chr4:5565853-5567458 REVERSE LENGTH=1403
Length=1403
Score = 654 bits (354), Expect = 0.0
Identities = 424/458 (93%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 148 CTCTTATGCAGTTTTCATTCGAGAA-GATTCTCAAGAGTGAGATTTTCGCTATAGTTCTC 206
|||||||||||||||| |||||||| | ||||||||||||||| ||| |||| ||||||
Sbjct 801 CTCTTATGCAGTTTTCTTTCGAGAATG-TTCTCAAGAGTGAGACGTTCTCTATGGTTCTC 859
Query 207 GAGATGCAAATCTATACGTCGCTTGTGGCTACTTGTGTTGCGGTTATCGGGTTGTTTGCG 266
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 860 GAGATGCAAATCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCG 919
Query 267 AGCGGGGATTGGCTGTTGTTGAGTAAGGAGATGGAAGAGTTTCAGGAGGGTCAAAG-CAT 325
|||||||| ||| ||||||||||| |||||||||||||||||| ||||||| ||| |||
Sbjct 920 AGCGGGGAATGGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGAGGGTC-AAGTCAT 978
Query 326 TTATGTTTTGAATTTGGTTGGGACAGCGGTTTCGTGGCAACTGGGTTCTGTAGGATCCAT 385
||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| || |
Sbjct 979 TTATGTTTTGACTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGT 1038
Query 386 GGCGCTTATATTTCTGGTGTCTTCGCTGTTTTCAAACTTTATTGGTACACTCTCACTCAT 445
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1039 GGCGCTTATATTTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCAT 1098
Query 446 TGTTACGCCTCTTGCAGCCATTGCCGTGTTGCACGACAAGCTGACTGAGGTTAAGATGGT 505
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1099 TGTTACGCCTCTTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGT 1158
Query 506 CGCAATGCTCATTGCCTTCATGGGATTCTCGTTTTATATCTACCAGACCTATCTTGATGA 565
||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 1159 CGCGATGCTCATTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGA 1218
Query 566 CTTGAAAGTACAAAGAGCACGAGAAGCTTAGGCCGAAT 603
| |||||||||||||||||||||||||| |||| ||||
Sbjct 1219 CCTGAAAGTACAAAGAGCACGAGAAGCTCAGGCTGAAT 1256
> AT5G41160.1 | Symbols: ATPUP12, PUP12 | purine permease 12 |
chr5:16477360-16478436 FORWARD LENGTH=1077
Length=1077
Score = 603 bits (326), Expect = 8e-172
Identities = 415/459 (90%), Gaps = 2/459 (0%)
Strand=Plus/Plus
Query 148 CTCTTATGCAGTTTTCATTCGAGAAGATTCTCAAGAGTGAGATTTTCGCTATAGTTCTCG 207
|||||||||||||||| ||||||||| ||||||||||||||| | || |||| |||||||
Sbjct 620 CTCTTATGCAGTTTTCTTTCGAGAAGGTTCTCAAGAGTGAGACTCTCTCTATGGTTCTCG 679
Query 208 AGATGCAAATCTATACGTCGCTTGTGGCTACTTGTGTTGCGGTTATCGGGTTGTTTGCGA 267
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| || |
Sbjct 680 AGATGCAAATCTATACGTCGCTTGTGGCTTCTTGTGTAGCGGTTATCGGATTGTTCGCAA 739
Query 268 GCGGGGATTGGCTGTTGTTGAGTAAGGAGATGGAAGAGTTTCAGGAGGGTCAAAG-CATT 326
||||||| ||| ||||||||||| ||||||||||||||||||||| |||| ||| ||||
Sbjct 740 GCGGGGAATGGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCAGGAAGGTC-AAGTCATT 798
Query 327 TATGTTTTGAATTTGGTTGGGACAGCGGTTTCGTGGCAACTGGGTTCTGTAGGATCCATG 386
|||||||||| |||||| ||| ||||||||||||| ||| |||||| ||||||| || ||
Sbjct 799 TATGTTTTGACTTTGGTCGGGGCAGCGGTTTCGTGTCAATTGGGTTGTGTAGGAGCCGTG 858
Query 387 GCGCTTATATTTCTGGTGTCTTCGCTGTTTTCAAACTTTATTGGTACACTCTCACTCATT 446
||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 859 TCGCTTATATTTCTGGTGTCTTCGCTGTTTTCAAACCTTATTAGTACGCTCTCACTCATT 918
Query 447 GTTACGCCTCTTGCAGCCATTGCCGTGTTGCACGACAAGCTGACTGAGGTTAAGATGGTC 506
||||||||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 919 GTTACGCCTCTCGCGGCCATTGCGGTGTTCCATGACAAGCTGACTGAGGTTAAGATGGTG 978
Query 507 GCAATGCTCATTGCCTTCATGGGATTCTCGTTTTATATCTACCAGACCTATCTTGATGAC 566
|| |||| ||| ||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 979 GCGATGCCCATCGCCTTCACAGGATTCACGTTTTATATCTACCAGAACTATCTTGATGAC 1038
Query 567 TTGAAAGTACAAAGAGCACGAGAAGCTTAGGCCGAATGA 605
||||||||||||||||||||||||||| |||||||||||
Sbjct 1039 TTGAAAGTACAAAGAGCACGAGAAGCTCAGGCCGAATGA 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5