BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942660

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35830.1 | Symbols: ACO1 | aconitase 1 | chr4:16972598-16978...   294    2e-79


> AT4G35830.1 | Symbols: ACO1 | aconitase 1 | chr4:16972598-16978057 
REVERSE LENGTH=3214
Length=3214

 Score =  294 bits (159),  Expect = 2e-79
 Identities = 177/186 (95%), Gaps = 0/186 (0%)
 Strand=Plus/Plus

Query  3     CGAAGCAATTTGGTGGGAATGGGAATCATACCTTTGTGCTTCAAGACAGGAGAAGATGCC  62
             ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| 
Sbjct  2536  CGAAGCAATTTGGTGGGAATGGGAATCATACCTTTGTGCTTCAAGGCGGGAGAAGATGCT  2595

Query  63    GAGACACTAGGCCTGACGGGTCAGGAGCTTTACACCATTGATCTCCCAAACAGTGTTAGT  122
             ||||| || ||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct  2596  GAGACCCTTGGCCTAACGGGTCAGGAGCTTTACACCATTGAGCTCCCAAACAATGTTAGT  2655

Query  123   GAGATCAAACCAGGACAAGATGTAACAGTCATCACAAACAATGGCAAATCTTTCACATGT  182
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  2656  GAGATCAAACCAGGACAAGATGTAACAGTCGTCACAAACAATGGCAAATCTTTCACATGT  2715

Query  183   ACACTC  188
             ||||||
Sbjct  2716  ACACTC  2721



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5