BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942663

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4...   313    1e-84
  AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding tran...  97.1    2e-19


> AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12566935-12568754 
REVERSE LENGTH=1288
Length=1288

 Score =  313 bits (169),  Expect = 1e-84
 Identities = 213/233 (91%), Gaps = 8/233 (3%)
 Strand=Plus/Plus

Query  327  GAAAAGGAAAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTG  385
            ||||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || |||
Sbjct  523  GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTG  580

Query  386  AAGAGAGTAGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAG  445
            || |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||
Sbjct  581  AAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAG  640

Query  446  AGTTGACTATTGAAGAAGATGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGA  505
            ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||
Sbjct  641  AGTTGACTATTGAAGAAGATGATGAT--T-GGGAAGGAATTGAGAGGAGTGAACTTGAGA  697

Query  506  AAGCCTTTGCAGCTGCTGCAAAACTTTTGGAAGAATCCGGGAAAG-TGGAAGA  557
            |||||||||| ||||||| ||| |||||||||||||||||||||| || ||||
Sbjct  698  AAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAAAGCTG-AAGA  749


> AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding transcriptional 
regulator | chr1:4929123-4930904 REVERSE LENGTH=1115
Length=1115

 Score = 97.1 bits (52),  Expect = 2e-19
 Identities = 80/92 (87%), Gaps = 7/92 (8%)
 Strand=Plus/Plus

Query  14   CTCCTCCAATGGCGGTCAACTCCAATCCTCGCTTTCTCTCTTTTTCTTCGGTGCTCGTC-  72
            |||||| |||||||||||||||||||||||||||||||||||  ||||| || |||||| 
Sbjct  114  CTCCTCTAATGGCGGTCAACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGTACTCGTCA  173

Query  73   --GG---TTTTGCAGTGAAACGGCATG-ATTC  98
              ||   |||||||||||||||||||| ||||
Sbjct  174  CCGGAGGTTTTGCAGTGAAACGGCATGGATTC  205



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26724566204


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5