BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942669
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08790.1 | Symbols: | Nitrilase/cyanide hydratase and apoli... 1520 0.0
> AT4G08790.1 | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein | chr4:5608240-5611215
REVERSE LENGTH=1270
Length=1270
Score = 1520 bits (823), Expect = 0.0
Identities = 920/967 (95%), Gaps = 5/967 (1%)
Strand=Plus/Plus
Query 1 GTAGACCGGCCACT--G-CCTGCGGATGAACGCTTACTCTGTTTCTCTCGACTTCACTAA 57
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 73 GTAGACCGGCCACTGAGTGCTGCTGATGAACGCTTACTCTGTTTCTCTCGACTTCACTAA 132
Query 58 ACCTTCTCTATTCACAAGAATCGCTCTCTCTACTCAGATTCCTCTAACCATGGCCACCAC 117
|||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 133 ACCTTCTCTATTCACACGCATCACTCTCTCTTCTCAGATTCCTCTAACCATGGCCACCAC 192
Query 118 TGTAAACAAAACAGTTCGCGTCGCAGCTGCTCAAATGACATCGGTCAATGATCTAATGAC 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TGTAAACAAAACAGTTCGTGTCGCAGCTGCTCAAATGACATCGGTCAATGATCTAATGAC 252
Query 178 CAATTTCGCCACTTGCTCTCGTCTCGTTCAAGAAGCAGCATTGGCTGGTGCAAAGCTGAT 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CAACTTCGCCACTTGCTCTCGTCTCGTTCAAGAAGCAGCATTGGCTGGTGCAAAGCTGAT 312
Query 238 TTGTTTCCCTGAGAACTTCTCCTTTGTGGGAAATAAAGAAGGAGAGAGTGTGAAAATTGC 297
||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 313 TTGCTTCCCTGAGAACTTCTCTTTTGTGGGAGATAAGGAAGGAGAGAGTGTGAAAATTGC 372
Query 298 TGAACCATTAGACGGGCCAGTGATGCAACGGTATTGCTCTCTCGCCAGGGATTCAAATAT 357
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 373 TGAACCATTAGATGGCCCAGTGATGGAACGGTATTGCTCTCTCGCCAGGGATTCAAATAT 432
Query 358 ATGGTTTTCTCTTGGAGGCTTCCAAGAGAGATTTGATGATACTCATTTGTGTAATACACA 417
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATGGTTGTCTCTTGGAGGTTTTCAAGAGAGATTTGATGATACTCATTTGTGTAATACACA 492
Query 418 TGTTGTGATCGATGATGCTGGAATGATCCGCA-ACACTTATCAGAAAATGCATTTGTTTG 476
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 493 TGTTGTGATCGATGATGCTGGAATGATCCG-AGACACTTATCAGAAAATGCATTTGTTTG 551
Query 477 ATGTTGATGTTCCTGGTGGAAGCTCATACAAGGAAAGCAGCTTTACGGTTCCAGGGACAA 536
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 552 ATGTTGATGTTCCTGGTGGAAGCTCGTACAAAGAAAGCAGCTTTACAGTTCCAGGGACAA 611
Query 537 AGATTGTTTCCGTAGACAGCCCTGTTGGGCGGTTAGGCCTTACTGTATGCTACGATTTGA 596
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 612 AGATTGTTTCCGTAGACAGCCCTGTCGGGCGCTTAGGCCTTACTGTATGCTACGATTTGA 671
Query 597 GGTTTCCGAAGATATATCAGCAACTGAGATTTGACCAGAAAGCTCAGGTTTTACTGGTAC 656
|||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 672 GGTTCCCTAAGATATATCAGCAACTGAGATTTGAACAGAAAGCTCAGGTTTTACTAGTAC 731
Query 657 CGTCAGCTTTCACCAAGGTCACTGGGGAGGCTCACTGGGAGATTCTTCTTCGAGCCCGAG 716
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 732 CATCAGCTTTCACCAAGGTCACTGGGGAGGCACACTGGGAGATTCTTCTTCGAGCCCGAG 791
Query 717 CAATTGAAACGCAATGTTATGTCATAGCTGCTGCTCAAGCTGGAAAGCATAATGAGAAAA 776
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 792 CAATTGAAACTCAATGTTATGTCATAGCTGCTGCTCAAGCAGGAAAGCATAATGAGAAAA 851
Query 777 GAGAAAGTTATGGTGACACACTGATCATTGATCCGTGGGGAACTGTGGTCGGAAGGTTAC 836
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 852 GAGAAAGTTATGGTGACACACTGATCATTGATCCGTGGGGAACTGTAGTTGGAAGGTTAC 911
Query 837 CCGATCGTGTTTCGACTGGCATTGTTGTGGCAGATATTGATTTTTCACTGATTGACTCGG 896
| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 912 CTGATCGTGTTTCGACCGGCATTGTCGTGGCAGATATTGATTTTTCATTGATTGACTCAG 971
Query 897 TGAGAACAAAAATGCCAATAGATAAGCAACGGGTCTCGCTAGATCTCTGATGAACCCATT 956
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 972 TGAGAACAAAAATGCCAATAGATAAGCAACGAGTCTCAATAGATCTCTGATGAAACCATT 1031
Query 957 GGTGTTG 963
|||||||
Sbjct 1032 GGTGTTG 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5