BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942676 Length=610 Score E Sequences producing significant alignments: (Bits) Value AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa... 459 2e-128 > AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) family protein | chr1:2929217-2931841 REVERSE LENGTH=2116 Length=2116 Score = 459 bits (248), Expect = 2e-128 Identities = 482/583 (83%), Gaps = 63/583 (11%) Strand=Plus/Plus Query 1 CTCGAATCCAAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA 60 ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| || Sbjct 1194 CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA 1253 Query 61 AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTA 119 |||| |||||||||||||||| | |||||||| | |||| |||||||||||||||||| Sbjct 1254 AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA 1312 Query 120 AGTGGTGAAGGTGGAGAAGAAACGCaaaaaaaCCTAAATTTATTGAAAACAAATATTTTG 179 ||||||||||||||||||||||| ||||| || || | | | | | Sbjct 1313 AGTGGTGAAGGTGGAGAAGAAACACAAAA-----TA--TTC-T--A---C---T-----G 1351 Query 180 CTACTTGATGTTGCGCCTTTGCAC-CTCAGTATTGACACTGTCGGAGGCGTGATGACAAA 238 || | ||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| Sbjct 1352 CT--T-GATGTTGCGCCTTTG-AGTCTCGGTATTGAAACTGTCGGAGGCGTGATGACAAA 1407 Query 239 CATTATTCCT-----C--GG--ATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCA 289 ||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 1408 CATTATTCCGAGGAACACGGTGATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCA 1467 Query 290 AGATCAGCAAACTACTGTTACTATCAACGTCTATGAAG---AGATAAGCATGACGAAAGA 346 |||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||| Sbjct 1468 AGATCAGCAAACTACTGTGACTATCAACGTCTACGAAGGCGAGAGAAGCATGACGAAAGA 1527 Query 347 TAACCCCGAGCTCGGAAATTTCCAGCTCACCGGCCTTCTTCCTGCACCTAGACGCAAGGA 406 ||||| |||||| ||||| ||| | ||||| ||| ||||||||||||| || | ||| Sbjct 1528 TAACCGCGAGCTTGGAAAATTCGATCTCACAGGCATTCTTCCTGCACCCAG--G---GGA 1582 Query 407 ACAGTTTTTCATGGGGGTGCCACAGATGGAGGTGACTTTCGAAGTGGACGCAAATGGGAT 466 || | |||||||| |||||||||||||||||||||||||||||||| Sbjct 1583 ---GT-------G------CCACAGATTGAGGTGACTTTCGAAGTGGACGCAAATGGGAT 1626 Query 467 TCTGCAAGTGAACACC-GAAGACAAAGTTCCAAAGATGTCACAGTCAATTACAATAACGA 525 ||||| ||||| | | |||||||||||| | |||| |||||| || ||||||||||||| Sbjct 1627 CCTGCAGGTGAA-AGCTGAAGACAAAGTTGCTAAGACGTCACAATCGATTACAATAACGA 1685 Query 526 ACGATAAAGGTCGTTTGACAGGAGAAGAGATTGATGAAATGAT 568 ||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1686 ACGATAAAGGTCGTTTGACAGAAGAAGAGATTGAGGAAATGAT 1728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29386975995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5