BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942680
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:... 267 6e-71
AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:... 239 1e-62
> AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:5657276-5657665
REVERSE LENGTH=282
Length=282
Score = 267 bits (144), Expect = 6e-71
Identities = 241/287 (84%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 21 ATGAAGACAATTATTTTGTCTTTAACTTTTCTAGTCCTTTTTTCCTCATGTACATCAATA 80
||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |||
Sbjct 1 ATGAAGACAATTATTTTGTTTTTAACTCTTCTAGTCATTTCTTCCTCATGTACATCGATA 60
Query 81 ATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATTAGCGAGCC 138
|||| ||||| | | |||| | |||||| ||||| |||||| | |||| || ||| |
Sbjct 61 ATTA-CCAAAACA-ATGAATTCAAAAGAGACAACATATCTTGATAGTCCAGCAGTGAGTC 118
Query 139 CTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACAGTCTCTTCGTCAAGGCGTA 197
||||||| |||| ||| |||||||||||||||||| || || ||| ||| ||||||||||
Sbjct 119 CTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAGGCGTA 177
Query 198 ATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTA-CATT-CGTA 255
||| ||||||||||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 178 ATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATC-TTGC-TA 235
Query 256 GTTGTACAAGATTTATATGTCGTTGCAGTATTAGTGGCATTAAATAA 302
| |||| || |||| | |||||||||| || ||||| || ||||||
Sbjct 236 GGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
> AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:5673818-5674220
REVERSE LENGTH=282
Length=282
Score = 239 bits (129), Expect = 1e-62
Identities = 229/276 (83%), Gaps = 12/276 (4%)
Strand=Plus/Plus
Query 21 ATGAAGACAATTATTTTGTCTTTAACTTTTCTAGTCCTTTTTTCCTCATGTACATCAATA 80
||||||| || |||||||| ||||||| ||||||| |||| ||||||||||||||| |||
Sbjct 1 ATGAAGATAACTATTTTGTTTTTAACTCTTCTAGTTCTTTCTTCCTCATGTACATCGATA 60
Query 81 ATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATTAGCGAGCC 138
|||| ||||| | | |||| | |||||| || || |||||| || ||| | ||| |
Sbjct 61 ATTA-CCAAAACA-ATGAATTCAAAAGAGACAATATATCTTGATAACCCAGCCGTGAGTC 118
Query 139 CTTCAATGGATCAAATTCTAGTGGATATACATCTTGGACAGTCTCTTCG-TCAAGGCGTA 197
||||||| ||||||| ||||||||||||||||||||| || ||| || | ||||||||||
Sbjct 119 CTTCAATTGATCAAAATCTAGTGGATATACATCTTGGGCACTCT-TTTGTTCAAGGCGTA 177
Query 198 ATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTA-CATT-CGTA 255
||| ||||||||||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 178 ATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATC-TTGC-TA 235
Query 256 GTTGT-ACAAGATTTATATGTCGTTGCAGTATTAGT 290
| ||| | ||| ||| | |||||||||| ||| |||
Sbjct 236 GGTGTCAAAAG-TTTGTTTGTCGTTGCACTATCAGT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14979789202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5