BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942682
Length=274
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conser... 355 1e-97
AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein... 202 1e-51
> AT3G49010.1 | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved
1 | chr3:18166769-18168580 REVERSE LENGTH=891
Length=891
Score = 355 bits (192), Expect = 1e-97
Identities = 228/246 (93%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 29 CAAAGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTA 88
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CAAGGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTA 523
Query 89 CTTGCCTATTGTACGTGAGAAGCCAATCATGGAGCTCGTCAAGCTGACTTCAGAAATGAA 148
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 524 CTTGCCTATTGTACGTGAGAAGCCTACCATGGAACTCGTCAAGCTGACTTCAGAAATGAA 583
Query 149 GTCCTTCAAGGCGTATGATAAGATACGTCTTGAGCGCACGAACAAGAGACATGCTGGTGC 208
||| |||||||| | ||| |||||||| ||||||||||| |||||||| ||||| || ||
Sbjct 584 GTCTTTCAAGGCTTTTGACAAGATACGCCTTGAGCGCACTAACAAGAGGCATGCCGGAGC 643
Query 209 TAGAGCCAAGAGAGCCTCTGAGGCTGAGAAAGAAGAGAAGAAGTGAGGTCCTTCTTCAGA 268
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |
Sbjct 644 TAGAGCCAAGAGAGCCGCAGAGGCTGAGAAAGAAGAGAAGAAGTGAGGTCGTTCTTCTTA 703
Query 269 GGTAGA 274
||||||
Sbjct 704 GGTAGA 709
> AT3G48960.1 | Symbols: | Ribosomal protein L13e family protein
| chr3:18150444-18151412 REVERSE LENGTH=621
Length=621
Score = 202 bits (109), Expect = 1e-51
Identities = 187/224 (83%), Gaps = 8/224 (4%)
Strand=Plus/Plus
Query 35 TGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGACT-ACTTGC 93
|||||| ||| ||| | |||||||||| ||||| || ||||| |||| ||| | || |||
Sbjct 402 TGGTGATTCTGCACAACAAGAGTTGGCCAATGCAACACAAGTCCAAGTAGA-TCACATGC 460
Query 94 CTATTGTACGTGAGAA-GCCAATC-ATGGAGCTCGTCAAGCTGACTTCAGAAATGAAGTC 151
|||| || ||||| || ||||| | |||||||| || |||||||| || || ||||| |
Sbjct 461 CTATCGTTCGTGA-AATGCCAA-CAATGGAGCTTGTGAAGCTGACATCTGACATGAAATT 518
Query 152 CTTCAAGGCGTATGATAAGATACGTCTTGAGCGCACGAACAAGAGACATGCTGGTGCTAG 211
||||| || ||||| ||||| ||||| ||| ||| ||||||||||||||||||| |||
Sbjct 519 GTTCAATGCTTATGACAAGATCCGTCTAGAGGGCATAAACAAGAGACATGCTGGTGTTAG 578
Query 212 AGCCAAGAGAGCCT-CTGAGGCTGAGAAAGAAGAGAAGAAGTGA 254
||||||||||| || |||||||||||||||||||||||||||||
Sbjct 579 AGCCAAGAGAG-CTGCTGAGGCTGAGAAAGAAGAGAAGAAGTGA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12566937250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5