BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942683 Length=199 Score E Sequences producing significant alignments: (Bits) Value AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:... 163 5e-40 AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:... 158 2e-38 > AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:5657276-5657665 REVERSE LENGTH=282 Length=282 Score = 163 bits (88), Expect = 5e-40 Identities = 144/171 (84%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 11 GAGCCCTTCAATGGATCAA-ATGCTAGTGGATATACATCTTGGACAGTCTCTTCGTCAAG 69 ||| |||||||| |||||| || ||||||||||||||||| || || ||| ||| ||||| Sbjct 114 GAGTCCTTCAATTGATCAATAT-CTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAG 172 Query 70 GCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT- 128 |||||||| ||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 173 GCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTTG 232 Query 129 CGTAGTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 179 | ||| |||| || |||| |||||||||| || |||| || |||||| Sbjct 233 C-TAGGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282 > AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:5673818-5674220 REVERSE LENGTH=282 Length=282 Score = 158 bits (85), Expect = 2e-38 Identities = 137/161 (85%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 11 GAGCCCTTCAATGGATC-AAATGCTAGTGGATATACATCTTGGACAGTCTCTTCG-TCAA 68 ||| |||||||| |||| |||| |||||||||||||||||||| || ||| || | |||| Sbjct 114 GAGTCCTTCAATTGATCAAAAT-CTAGTGGATATACATCTTGGGCACTCT-TTTGTTCAA 171 Query 69 GGCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT 128 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 172 GGCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTT 231 Query 129 -CGTAGTTGT-ACAAGATTTAAATGTCGTTGCAGTATTAGT 167 | ||| ||| | ||| ||| |||||||||| ||| ||| Sbjct 232 GC-TAGGTGTCAAAAG-TTTGTTTGTCGTTGCACTATCAGT 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8853037776 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5