BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942684
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:... 163 5e-40
AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:... 163 5e-40
> AT4G08869.1 | Symbols: | Putative membrane lipoprotein | chr4:5657276-5657665
REVERSE LENGTH=282
Length=282
Score = 163 bits (88), Expect = 5e-40
Identities = 144/171 (84%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 11 GAGCCCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACAGTCTCTTCGTCAAG 69
||| |||||||| |||| ||| |||||||||||||||||| || || ||| ||| |||||
Sbjct 114 GAGTCCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAG 172
Query 70 GCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT- 128
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 173 GCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTTG 232
Query 129 CGTAGTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 179
| ||| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 233 C-TAGGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
> AT4G08875.1 | Symbols: | Putative membrane lipoprotein | chr4:5673818-5674220
REVERSE LENGTH=282
Length=282
Score = 163 bits (88), Expect = 5e-40
Identities = 137/160 (86%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 11 GAGCCCTTCAATGGATCAAATTCTAGTGGATATACATCTTGGACAGTCTCTTCG-TCAAG 69
||| |||||||| ||||||| ||||||||||||||||||||| || ||| || | |||||
Sbjct 114 GAGTCCTTCAATTGATCAAAATCTAGTGGATATACATCTTGGGCACTCT-TTTGTTCAAG 172
Query 70 GCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATT- 128
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 173 GCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTTG 232
Query 129 CGTAGTTGT-ACAAGATTTAAATGTCGTTGCAGTATTAGT 167
| ||| ||| | ||| ||| |||||||||| ||| |||
Sbjct 233 C-TAGGTGTCAAAAG-TTTGTTTGTCGTTGCACTATCAGT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8853037776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5