BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942688

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14570.2 | Symbols:  | UBX domain-containing protein | chr1:...   172    1e-42


> AT1G14570.2 | Symbols:  | UBX domain-containing protein | chr1:4983567-4987375 
FORWARD LENGTH=1793
Length=1793

 Score =  172 bits (93),  Expect = 1e-42
 Identities = 154/181 (85%), Gaps = 14/181 (8%)
 Strand=Plus/Plus

Query  44    CTCTGGTCTTTCTGCTATTCTC-GTC-TAACGAAATCAGAGAGGAAGAAGCCATTGAAGC  101
             |||||||| ||||||||||| | | | | | | |||||||||||||||||||||||||||
Sbjct  1446  CTCTGGTCATTCTGCTATTCCCAG-CTTGA-GGAATCAGAGAGGAAGAAGCCATTGAAGC  1503

Query  102   TAACACGA-CTGATTCCAGGTCAATCAAAGACAATTACATTGGAGTATGAATCTAACTTA  160
             |||||| | | |||||||||| ||||||||      ||||||||||||||||||||||||
Sbjct  1504  TAACACAAGC-GATTCCAGGTGAATCAAAG------ACATTGGAGTATGAATCTAACTTA  1556

Query  161   ACCTTTGAGCAATCTGGTGTTGCCAATTCCCTCG-TGTTTGCTACATGGGAATGAAAAAT  219
             ||||| ||||| |||||||||||||||||| | | | | |||||| ||||||||||| ||
Sbjct  1557  ACCTTGGAGCAGTCTGGTGTTGCCAATTCCAT-GATCTCTGCTACGTGGGAATGAAATAT  1615

Query  220   C  220
             |
Sbjct  1616  C  1616



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10606495039


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5