BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942690

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09100.1 | Symbols:  | RING/U-box superfamily protein | chr4...   608    1e-173


> AT4G09100.1 | Symbols:  | RING/U-box superfamily protein | chr4:5811256-5811654 
FORWARD LENGTH=399
Length=399

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 377/400 (94%), Gaps = 4/400 (1%)
 Strand=Plus/Plus

Query  22   ATGTCATACTTTAAAAGAAACGAAGGAGCAATTGTTTTTGCGTTAGCAAGTGTCGGGTTC  81
            ||||||||||| ||||||||||||||| ||||||| |||||||| || ||  ||||||||
Sbjct  1    ATGTCATACTTCAAAAGAAACGAAGGAACAATTGTGTTTGCGTTTGCGAGCATCGGGTTC  60

Query  82   ATAGCGTTTTAT-TGCATTAATTACTACATTCGGCGATGCAGAAACCAG-GCCGCAGCAG  139
            |||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  61   ATAGCGTTTTATAT-CATTAATTACTACATTCGGCGATGCAGAAACC-GTGCCGCAGCAG  118

Query  140  CCGGGGACAGTGAGGAAGCTCGAATGAGTCCGAGGAGGCCACCGCGAGGGCTTGACCCTG  199
            ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct  119  CCGGGGACATTGAGGAAGCTCGAATGAGTCCGAGGAGGCCACCGCGAGGACTTGACGCTG  178

Query  200  AAGCCATCGAGTCGTTTCCTTCTTTCATTTACACAAAAGCTAGAGGGATTGAGCCAGGAA  259
            |||||||| ||||||||||||| ||| |||||||  |||||||||| |||||||||||||
Sbjct  179  AAGCCATCAAGTCGTTTCCTTCATTCGTTTACACGGAAGCTAGAGGAATTGAGCCAGGAA  238

Query  260  TAGGCGAGCTAGAATGTGTTGTGTGTTTGAATGAATTCAAAGACGATGAAACGCTGCGTT  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  TAGGCGAGCTAGAATGTGTTGTGTGTTTGAATGAATTCAAAGACGATGAAACGCTGCGTT  298

Query  320  TGGTACCACCTTGTGTACATGTGTTTCATGCTGACTGTGTAGACATTTGGCTTTCTCATA  379
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  299  TGGTACCACCTTGTGTACATGTGTTTCATGCTGACTGTGTAGACATCTGGCTTTCTCATA  358

Query  380  GCTCCACATGTCCTATCTGTCGTGCTAATGTAGCTCCTTA  419
            |||||||||||||||||||||||||||| |||| ||||||
Sbjct  359  GCTCCACATGTCCTATCTGTCGTGCTAAAGTAGTTCCTTA  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21162722329


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5