BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942692
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4... 1210 0.0
AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4... 675 0.0
AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4... 538 4e-152
> AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035
FORWARD LENGTH=1038
Length=1038
Score = 1210 bits (655), Expect = 0.0
Identities = 937/1067 (88%), Gaps = 43/1067 (4%)
Strand=Plus/Plus
Query 21 ATGAATATCTTCACGAGATATCGCCTTCATCGGGTCGTATCAAGTGTTATATTGCCGCTC 80
|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||
Sbjct 1 ATGAATATCTTCACGAGATATCACCTTCCTCGGGTCGTATCAGGTGTTATATTGCCGCTC 60
Query 81 TTCCTTTTCCATCTTTTGCCTTACGTTACATGCCAGCAAGAGTCGGGATCC-GC-AA-AG 137
|||||||||||||||||||||||||||||||| ||||||||||||| | || | || ||
Sbjct 61 TTCCTTTTCCATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTA-CCAACAAACAG 119
Query 138 CCTAATGTACAAACCGATTTCTCGA-CAGAATCGATTATCGCAATCGTTATGCTTGCAAT 196
| | | | ||||||| || |||| | | || || || || ||||||||| ||||||||||
Sbjct 120 CATTA-G-ACAAACCAATCTCTC-AGCTGACTCAATAATTGCAATCGTTGTGCTTGCAAT 176
Query 197 ATTTATTA-CATTAAGCATGGTCTCTTGTTGCTTGCACTGCACATTCTATAGGGCAGAGA 255
||||| || ||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 177 ATTTA-TATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGGGAAGAGA 235
Query 256 CCGAGGCGGCAGGCCAAGAAGTGTTGCACAATAGGGCAAGGCGCGGGCTCGAGAAGGAAG 315
| ||||||||| ||||| || || |||| ||| |||||||| ||||||||||||||||
Sbjct 236 TTGGGGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAGGAAG 295
Query 316 TCATCGAGTCATTTCCGGTTTTCCTGTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAG 375
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 TCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAG 355
Query 376 GCGGAGTAGAATGTGCAATTTGTCTAAGTGAGTTTGAGGATCAAGAAACGCTACGTTGGA 435
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 356 GCGGTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTACGTTGGA 415
Query 436 TGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCCGAT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 416 TGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTTGGT 475
Query 496 CCACCTGCCCGGTCTGTCGTGCAAATCTGTCTTTGAAACCCAACGAGAGTTTTCCATATC 555
|||| || ||||| |||||||||||||||||| | |||||| ||||||| ||||||||
Sbjct 476 CCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCATATC 535
Query 556 CAAACATGGATGTTGAAACGGGAGGTGTTCAAGAACCCCCCAATGAGAGAAGCTTGATAG 615
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 536 TGAACATGGATGTTGAAACGGGAGGTGTTCAAAAACTCCCCAATGAGAGAAGCTTGACAG 595
Query 616 GTAATATTGCAAATTATACAACACCTCGATCGAGGTCTACAGG-TCTATTGGCAAACTGG 674
|||||| || | | ||||| | ||||||| |||||||| | ||||| | | ||||
Sbjct 596 GTAATAGTG----T-A-ACAAC---TAGATCGAGATCTACAGGGT-TATTGTCGAGCTGG 645
Query 675 AAAATGGCTGAGATATTCGTCCCTAGATCTCATTCGACCGGACATTCATTGGTTCAAC-- 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CGTATGGCTGAGATATTCGTCCCTAGATCTCATTCGACCGGACATTCATTGGTTCAACAA 705
Query 733 -TAGGTGAAAATCTAGACCGATTCAC-TCTGCAATTACCGGAGGAGGTGCAGAGACAATT 790
||||||||||||||||||| ||||| | |||||||||| |||||||| || ||||||||
Sbjct 706 CTAGGTGAAAATCTAGACCGGTTCACAT-TGCAATTACCAGAGGAGGTACAAAGACAATT 764
Query 791 GGTTAGCTTGAATCTAATCAGGAGAAGCCACATGGCCTTACCTCAAGCCATGAGTTCGAG 850
|||||||||||||| || |||||||||||||| | ||||||||||||| ||||||||||
Sbjct 765 AGTTAGCTTGAATCTGATAAGGAGAAGCCACATAGTCTTACCTCAAGCCGTGAGTTCGAG 824
Query 851 ACAGGGCTACAGAAGCGGGAGCGTTGGGAGCGAGAGAGGTGGTTTCTCTGAGGGACGGCA 910
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 825 GCAGGGCTACAGGAGCGGGAGCGTTGGGAGCGAGAGAGGTGGTTTCTCTCAGGGACGGCA 884
Query 911 AACGCATCTGC-GGGCCTTATCTATGTCTCTCTCTTTCTCTTTTCAAACTACTTCTGTTA 969
|||||| | | ||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 885 AACGCACC-GAAGGGCCTTATCTATGTCTTTCTCTTTCTCTTTCCAAACTGCTTCTGTTC 943
Query 970 GGTCAACACGTGACAGGAATGATCAAGTCCAAGAGACTTCCCAAGCCAAGGACAAATATT 1029
|||||| || ||||| ||||||||||| ||||| || ||| | |||||||||
Sbjct 944 GGTCAATACATGACATGAATGATCAAGCCCAAG---CT----AAG----G-ACAAATATT 991
Query 1030 TTGGTGAACGGTCATTTGAACGCCTCATGCCAGAG-AG--GGTCTAA 1073
||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 992 TTGGTGAACGGTCATTTGAACGCCTTATGCCAGAGGAGAAGGTCTAA 1038
> AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4:5815849-5816922
FORWARD LENGTH=1074
Length=1074
Score = 675 bits (365), Expect = 0.0
Identities = 862/1092 (79%), Gaps = 73/1092 (7%)
Strand=Plus/Plus
Query 21 ATGAATATCTTCAC--GAGATATC-GCCTTCATCGGGTCGTATCAAGTGTTATATTGCCG 77
|||| ||||||||| ||||| || | | |||||| || || || ||||| |||||||
Sbjct 1 ATGACTATCTTCACAAGAGATTTCAG-C--CATCGGATCCTAGCATGTGTTTTATTGCCA 57
Query 78 CTCTTCCTTTTCC-ATCTTTTGCCTTACGTTACATGCCAGCAAGAGTCGGGATCCGCAAA 136
||||||||||||| || |||||||||||| || |||||||||| ||||| ||| || |
Sbjct 58 CTCTTCCTTTTCCAAT-GTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGC-AG 115
Query 137 G-C-CTAATGTACAAACCGATTTCTCGACAG-AATCGATTATCGCAATCGTTATGCTTGC 193
| | | |||| | ||| | | | || |||||| || | |||||| ||||| |
Sbjct 116 GTCGC-AATGGA-AAA---A---GTAAAGAGTCATCGATAATTGGGATCGTTTTGCTTTC 167
Query 194 AATAT-TTATTACATTAAGCATGGTC-TCTTGTTGCTTGCAC--TGCACATTCTATAGGG 249
| | || | | ||| ||||| | || |||||| || || | || ||| |
Sbjct 168 -GT-TGTTCCT-C-TTACTTTTGGTCGT-TTATTGCTTAAACTATGGATGTTGTAT--TG 220
Query 250 CAGAGACCGAGGC-GGCAGGCCAAGAAGTGTTGCACAATAGGGCAAGGCGCGGGCTCGAG 308
||||| ||| | || ||| || |||||||| |||| ||| | ||||| ||| | ||
Sbjct 221 AAGAGAATGAGACAGG-AGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGAC 279
Query 309 AAGGAAGTCATCGAGTCATTTCCGGTTTTCCTGTATTCAGAAGTTAAAGGGCTCAAGATA 368
||||| ||||||||||| ||||||| |||||| |||||||| ||||||| | ||||||||
Sbjct 280 AAGGACGTCATCGAGTCCTTTCCGGCTTTCCTATATTCAGAGGTTAAAGCGTTCAAGATA 339
Query 369 GGCAAAGGCGGAGTAGAATGTGCAATTTGTCTAAGTGAGTTTGAGGATC-AAGAAACGCT 427
||||| |||||||| |||||||||||||||||| | |||||||| || | |||| ||||
Sbjct 340 GGCAACGGCGGAGTTGAATGTGCAATTTGTCTATGCGAGTTTGAAGA-CGAAGAGCCGCT 398
Query 428 ACGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTC 487
|||||||||||||||||||||||| |||||||||||||||||||| || | ||||||||
Sbjct 399 ACGTTGGATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTC 458
Query 488 TTCCCGATCCACCTG-CCCGGTCTGTCGTGCAAATCTGTCTTTGAAACCCAACGAGAGTT 546
||| || ||||| || |||| |||| ||||||||| ||||| |||| || || || |
Sbjct 459 TTCTCGGTCCACATGTCCCG-TCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCT 517
Query 547 TTCCATATCCAAACATGGATGTTGAAACGGGA---G----G-----TGTTCAAGAACCCC 594
||||| |||| | |||||||||||||||||| | | |||||||||| |||
Sbjct 518 TTCCACATCCGAGTATGGATGTTGAAACGGGAAATGCACAGAGAGGTGTTCAAGAATCCC 577
Query 595 CCAATGAGAGAAGCTTGA----TAG--GT---A-AT--A-T--T---GCAAATTATACAA 636
|| ||||||||||||||| ||| || | || | | | |||||||||||||
Sbjct 578 CCGATGAGAGAAGCTTGACAGGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAA 637
Query 637 CACCTCGATCGAGGTCTACAGG-TCTATTGGCAAACTGGAAAATGGCTGAGATATTCGTC 695
|||||||||| || |||||||| | ||||| | | |||| | || ||||| ||||| ||
Sbjct 638 CACCTCGATCAAGATCTACAGGGT-TATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTC 696
Query 696 CCTAGATCTCATTCGACCGGACATTCATTGGTTCAACTAGGTGAAAATCTAGACCGATTC 755
||| ||||||||||||| ||||||||||||||||||| | || | ||| |||||||||||
Sbjct 697 CCTCGATCTCATTCGACTGGACATTCATTGGTTCAACCATGTCAGAATATAGACCGATTC 756
Query 756 ACTCTGCAATTACCGGAGGAGGTGCAGAGACAATTGGTTAGCTTGAATCTAATCAGGAGA 815
|| ||||||||||||||||||||||| ||||||||||| ||| |||| || || | ||||
Sbjct 757 ACACTGCAATTACCGGAGGAGGTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGA 816
Query 816 AGCCACATGGCCTTACCTCAAGCCATGAGTTCGAGACAGGGCTACAGAAGCGGGAGCGTT 875
||||| || |||||||||| ||||| |||||| |||||||||||||| ||||| ||||||
Sbjct 817 AGCCATATAGCCTTACCTCGAGCCAGGAGTTCTAGACAGGGCTACAGGAGCGGAAGCGTT 876
Query 876 GGGAGCGAGAGAGGTGGTTTCTCTGAGGGACGGCAAACGCATCTG-CGGGCCTTATCTAT 934
|||| ||||||| ||||||||| | ||||||||||| | || | || ||| ||||||
Sbjct 877 GGGAACGAGAGAACCGGTTTCTCTCAAGGACGGCAAACAC-TCAGGCGAGCCATATCTAC 935
Query 935 GTCTCTCTCTTTCTCTTTTCAAACTACTTCTGTTAGGTCAACACGTGACAGGAATGATC- 993
||| || ||||||||||||||| || || ||||| |||| |||| ||||||| | |||
Sbjct 936 GTCGCTATCTTTCTCTTTTCAACCTGCTCCTGTTCGGTCCACACTTGACAGGGACAATCT 995
Query 994 AAGTCCAAGAGACTTCCCAAGCCAAGGACAAATATTTTGGTGAACGGTCATTTGAACGCC 1053
|| | | ||||||||||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct 996 AA-TGCGAGAGACTTCCCAAGCTAATGACAAAGATTTTGGTGAACGGTCATTCCAACGCC 1054
Query 1054 TCATGCCAGAGA 1065
||||||||||||
Sbjct 1055 TCATGCCAGAGA 1066
> AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4:5812488-5813396
FORWARD LENGTH=909
Length=909
Score = 538 bits (291), Expect = 4e-152
Identities = 477/566 (84%), Gaps = 16/566 (3%)
Strand=Plus/Plus
Query 21 ATGAATATCTTCACGAGATATCGCCTTC-ATCGGGTCGTATC-AAGTGTTATATTGCCGC 78
|||| ||| ||| ||||| ||| | || || || ||| | | ||| ||| | |||||||
Sbjct 1 ATGACTATATTCGCGAGAGATC-TCATCTATAGGATCGAAACGAAG-GTTTTGTTGCCGC 58
Query 79 TCTTCCTTTTCCATCTT-TTGCCTTACGTTACATGCCAGCAAGAGTCGGGATCCGCAAAG 137
|||||||| ||||| || || ||||| || ||||||||||||||||| | ||||| | |
Sbjct 59 TCTTCCTTGTCCAT-TTGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGA- 116
Query 138 CC-TAAT-GTACAAACCGATTTCTCGACAGAATCGATTATCGCAATCGTTATGCTTGCAA 195
|| ||| | | ||||| ||||| | || ||| || | ||||||||| || |||||||||
Sbjct 117 CCGCAATAG-AAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCATTGTGCTTGCAA 175
Query 196 TATTTAT-TACATTAAGCATGGTCTCTTGTTGCTTGCACTGCACATTCTATAGGGCAGAG 254
||||||| | |||||||||||||| |||||| ||||||| ||||||||||| ||||||
Sbjct 176 TATTTATCT-CATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAG 234
Query 255 ACCGAGGCGGCAGGCCAAGAAGTGTTGCACAATAGGGCAAGGCGCGGGCTCGAGAAGGAA 314
||||||||| ||||||||||||| |||| ||| || ||||| |||||||||||||||
Sbjct 235 GTTGAGGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAA 294
Query 315 GTCATCGAGTCATTTCCGGTTTTCCTGTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAA 374
|| | ||||| ||||| ||||||| ||||| || ||||||||||||||||||||||||
Sbjct 295 CTCGTTGAGTCCTTTCCAATTTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAAA 354
Query 375 GGCGGAGTAGAATGTGCAATTTGTCTAAGTGAGTTTGAGGATCAAGAAACGCTACGTTGG 434
||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||
Sbjct 355 GGCGGAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTGG 414
Query 435 ATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCC-G 493
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 415 ATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTCAG 474
Query 494 ATCCACCTGCCCGGTCT-GTCGTGCAAATCTGTCTTTGAAACCCAACGAGAGTTTTCCAT 552
||||| || |||| || ||||||||||||||||| | |||||| ||||||| |||||
Sbjct 475 -TCCACATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCAT 532
Query 553 ATCCAAACATGGATGTTGAAACGGGA 578
|||| | || |||| |||||||||||
Sbjct 533 ATCCGATCACGGATCTTGAAACGGGA 558
Score = 189 bits (102), Expect = 5e-47
Identities = 137/154 (89%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 716 ACATTCATTGGTTCAACTAGGTGA-AAATCTAGACCGATTCACTCTGCAATTACCGGAGG 774
|||||||||| ||||||||||| | |||||||| |||||||| || || ||||| ||||
Sbjct 576 ACATTCATTGCTTCAACTAGGT-ACGAATCTAGATCGATTCACACTTCAGTTACCAGAGG 634
Query 775 AGGTGCAGAGACAATTGGTTAGCTTGAATCTAATCAGGAGAAGCCACATGGCCTTACCTC 834
|| |||| ||||||||||||||||||||||| || |||| |||| ||||| |||||||||
Sbjct 635 AGATGCAAAGACAATTGGTTAGCTTGAATCTGATAAGGACAAGCAACATGACCTTACCTC 694
Query 835 AAGCCATGAGTTCGAGACAGGGCTACAGAAGCGG 868
|||||||||||||||||||||||||||||||||
Sbjct 695 GAGCCATGAGTTCGAGACAGGGCTACAGAAGCGG 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5