BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942693
Length=337
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4... 291 4e-78
AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4... 278 3e-74
> AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035
FORWARD LENGTH=1038
Length=1038
Score = 291 bits (157), Expect = 4e-78
Identities = 209/234 (89%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 75 AGAGGTTAAAGGGCTCAAGCTAGGCAAAGGCGGAGTGGAATGTGCAATTTGTCTAAAG-G 133
||| ||||||||||||||| ||||||||||||| || ||||||||||||||||| || |
Sbjct 327 AGAAGTTAAAGGGCTCAAGATAGGCAAAGGCGGTGTAGAATGTGCAATTTGTCT-GAGCG 385
Query 134 AGTTTGAGGATCAAGAAACGCTACGTTGGATGCCTCCTTGTAGCCATAATTTTCATGCTA 193
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 386 AGTTTGAGGATCAAGAAACGCTACGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTA 445
Query 194 ATTGCATCGACGTGTGGCTCTCTTCTCGGTCCACATGTCCCGTATGCCGTGCAAATCTGT 253
|||||||||| ||||||||||||||| ||||||||||||| || || |||||||||||||
Sbjct 446 ATTGCATCGATGTGTGGCTCTCTTCTTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGT 505
Query 254 CTCTAAAACTCGGCGACAGCTT-TCCATATCCGAGCATGGATCTTGAAACAGGA 306
|||| |||| ||| || || || |||||||| || ||||||| ||||||| |||
Sbjct 506 CTCTCAAACCCGGTGAGAG-TTATCCATATCTGAACATGGATGTTGAAACGGGA 558
> AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4:5815849-5816922
FORWARD LENGTH=1074
Length=1074
Score = 278 bits (150), Expect = 3e-74
Identities = 229/266 (86%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 75 AGAGGTTAAAGGGCTCAAGCTAGGCAAAGGCGGAGTGGAATGTGCAATTTGTCTAAAG-G 133
||||||||||| | ||||| ||||||| |||||||| ||||||||||||||||| | | |
Sbjct 318 AGAGGTTAAAGCGTTCAAGATAGGCAACGGCGGAGTTGAATGTGCAATTTGTCT-ATGCG 376
Query 134 AGTTTGAGGATC-AAGAAACGCTACGTTGGATGCCTCCTTGTAGCCATAATTTTCATGCT 192
||||||| || | |||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 377 AGTTTGAAGA-CGAAGAGCCGCTACGTTGGATGCCTCCTTGTAGCCATACTTTCCATGCT 435
Query 193 AATTGCATCGACGTGTGGCTCTCTTCTCGGTCCACATGTCCCGTATGCCGTGCAAATCTG 252
|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 436 AATTGCATTGACGAATGGCTCTCTTCTCGGTCCACATGTCCCGTCTGCCGTGCAAATTTG 495
Query 253 TCTCTAAAACTC-GGCGACAGCTTTCCATATCCGAGCATGGATCTTGAAACAGGAAATGC 311
||||| || || || |||||||||||| ||||||| |||||| ||||||| ||||||||
Sbjct 496 TCTCTGAAG-TCCGGTGACAGCTTTCCACATCCGAGTATGGATGTTGAAACGGGAAATGC 554
Query 312 TT-GAAGAGATGTACTAGAACTCCCC 336
|| ||| ||| | |||| |||||
Sbjct 555 ACAGA-GAGGTGTTCAAGAA-TCCCC 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15733805437
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5