BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942695
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4... 861 0.0
AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4... 599 2e-170
AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4... 597 6e-170
> AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035
FORWARD LENGTH=1038
Length=1038
Score = 861 bits (466), Expect = 0.0
Identities = 803/957 (84%), Gaps = 57/957 (6%)
Strand=Plus/Plus
Query 72 TTGCCGCTCTTCCTTTCCCAT-TATTTGCCTTACGTAACCTGCCAACAAGTGTCGGAATC 130
|||||||||||||||| |||| | |||||||||||| || || || |||| ||||| | |
Sbjct 52 TTGCCGCTCTTCCTTTTCCATCT-TTTGCCTTACGTTACATGTCAGCAAGAGTCGGTA-C 109
Query 131 C-GCAGACCGCAATaaaaaaaCAAATCTCCCAGCGGAAACGGTAATTGCAATTG-TGATT 188
| || || ||| || | |||| |||||| |||| || | |||||||||| | || |
Sbjct 110 CAACAAACAGCATTAGACAAACCAATCTCTCAGCTGACTCAATAATTGCAATCGTTG-TG 168
Query 189 CTTGCATTATTTATCTCATTAAGCATCGTCGCTTGTTGCTTGCACAACACATTGTATAGC 248
|||||| ||||||| |||||| |||| ||| |||||||||||||| || ||| |||||
Sbjct 169 CTTGCAATATTTATATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGG 228
Query 249 GCAGAGATTGAGGCGGCAAGCCAAGAAGTGTTGCACACTAGAGCGAGGCACGGGCTTGAG 308
| |||||||| ||||||| | ||||| || || |||| |||||| |||| ||||| |||
Sbjct 229 GAAGAGATTGGGGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAG 288
Query 309 AAGGAAGTCATCGAGTCTTTTCCATCTTTCCTTTATTCAGAAGTTAAAGGACTCAAGACA 368
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 289 AAGGAAGTCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATA 348
Query 369 GGCAAAGGCGGAGTAGAATGTGCAGTTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTA 428
||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 349 GGCAAAGGCGGTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTA 408
Query 429 CGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCT 468
Query 489 TCCCGATCCACCTGCCCGGTCTGTCGTGCGAATCTGTCTCAGAAACCCAACGAGAGTTTT 548
|| | ||||| || ||||| |||||||| |||||||||| |||||| ||||||| |
Sbjct 469 TCTTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTAT 528
Query 549 CCATATCCGAACATGGATGTTGAAACGGGAGGTGTTCAAGAACCCCCCAATGAGAGAAGC 608
||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 529 CCATATCTGAACATGGATGTTGAAACGGGAGGTGTTCAAAAACTCCCCAATGAGAGAA-- 586
Query 609 TTGACATGTAATAGTGTGACATGGAATAATAATGCAAATTATACAACACCTCGGTCGAGA 668
| | | ||||| || ||||| || || || | | || | ||||||
Sbjct 587 --G-C---------T-TGACA-GG--TAATAGTG-----TA-AC-A-A-CTAGATCGAGA 621
Query 669 TCTACAGGGTTACCGTCGAACTGGCGTATGGCTGAGATATTCTTCCCTAGATCTCATACG 728
|||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 622 TCTACAGGGTTATTGTCGAGCTGGCGTATGGCTGAGATATTCGTCCCTAGATCTCATTCG 681
Query 729 ACCGGACATTCATTGGTT---CAACTAGGTGAAAATCTAGACCGGTTCACATTGCAATTA 785
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACCGGACATTCATTGGTTCAACAACTAGGTGAAAATCTAGACCGGTTCACATTGCAATTA 741
Query 786 CCGGAGGATGTGCAAAGTCAATTGGTTAGCTTGAATCTGATAAGGAGAAGCCAAATGGCC 845
|| ||||| || ||||| ||||| ||||||||||||||||||||||||||||| || | |
Sbjct 742 CCAGAGGAGGTACAAAGACAATTAGTTAGCTTGAATCTGATAAGGAGAAGCCACATAGTC 801
Query 846 TTACCTCAAGCCATGAGTTCGAGACAGGGCTACAG-A-----AGCG-----AG--AG--- 889
|||||||||||| |||||||||| ||||||||||| | |||| || ||
Sbjct 802 TTACCTCAAGCCGTGAGTTCGAGGCAGGGCTACAGGAGCGGGAGCGTTGGGAGCGAGAGA 861
Query 890 --TGGTTTCCCTCAGGGTCGGCAAATGCACCGGCGGGCCTTATCTATGTCTCT-TACTTT 946
||||||| ||||||| ||||||| |||||| ||||||||||||||||| | | ||||
Sbjct 862 GGTGGTTTCTCTCAGGGACGGCAAACGCACCGAAGGGCCTTATCTATGTCTTTCT-CTTT 920
Query 947 CtttttttCAAACTACTTCTGTTCGGTCAACACATGACAGGAATGATCAAGTCCAAG 1003
|| ||| |||||| ||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 921 CTCTTTC-CAAACTGCTTCTGTTCGGTCAATACATGACATGAATGATCAAGCCCAAG 976
> AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4:5812488-5813396
FORWARD LENGTH=909
Length=909
Score = 599 bits (324), Expect = 2e-170
Identities = 489/567 (86%), Gaps = 18/567 (3%)
Strand=Plus/Plus
Query 21 ATGACTATCTTTGCGAGAGATCTCATCTATCA-AATCGTTAC-AAGAATTTTGTTGCCGC 78
|||||||| || |||||||||||||||||| | |||| || ||| ||||||||||||
Sbjct 1 ATGACTATATTCGCGAGAGATCTCATCTAT-AGGATCGAAACGAAG-GTTTTGTTGCCGC 58
Query 79 TCTTCCTT-TCCCATTAT-TTGCCTTACGTAACCTGCCAACAAGTGTCGGAATCCGCAGA 136
|||||||| | ||||| | || ||||| ||||| ||||| |||| ||| ||||||| |||
Sbjct 59 TCTTCCTTGT-CCATT-TGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGA 116
Query 137 CCGCAATaaaaaaaCAAATCTCCCAGCGGAAACGGTAATTGCAAT--TGTGATTCTTGCA 194
|||||||| |||||| ||| ||||| ||||||||||||| ||||| | || | ||||||
Sbjct 117 CCGCAATAGAAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCAT-TG-TGCTTGCA 174
Query 195 TTATTTATCTCATTAAGCATCGTCGCTTGTTGCTTGCACAACACATTGTATAGCGCAGAG 254
||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| ||||||
Sbjct 175 ATATTTATCTCATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAG 234
Query 255 ATTGAGGCGGCAAGCCAAGAAGTGTTGCACACTAGAGCGAGGCACGGGCTTGAGAAGGAA 314
||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||
Sbjct 235 GTTGAGGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAA 294
Query 315 GTCATCGAGTCTTTTCC-ATCTTTCCTTTATTCAGAAGTTAAAGGACTCAAGACAGGCAA 373
|| | ||||| ||||| || |||||| ||||| || |||||||| ||||||| ||||||
Sbjct 295 CTCGTTGAGTCCTTTCCAAT-TTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAA 353
Query 374 AGGCGGAGTAGAATGTGCAGTTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTACGTTG 433
||||||||||||||||||| ||||||| || ||||||| |||| ||||||| ||||||||
Sbjct 354 AGGCGGAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTG 413
Query 434 GATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCC- 492
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 414 GATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTCA 473
Query 493 GATCCACCTGCCCGGTCT-GTCGTGCGAATCTGTCTCAGAAACCCAACGAGAGTTTTCCA 551
| ||||| || |||| || ||||||| |||||||||| |||||| ||||||| ||||
Sbjct 474 G-TCCACATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCA 531
Query 552 TATCCGAACATGGATGTTGAAACGGGA 578
||||||| || |||| |||||||||||
Sbjct 532 TATCCGATCACGGATCTTGAAACGGGA 558
Score = 213 bits (115), Expect = 3e-54
Identities = 209/251 (83%), Gaps = 19/251 (8%)
Strand=Plus/Plus
Query 734 ACATTCATTGGTTCAACTAGGTGA-AAATCTAGACCGGTTCACA-TTGCAATTACCGGAG 791
|||||||||| ||||||||||| | |||||||| || |||||| || || ||||| |||
Sbjct 576 ACATTCATTGCTTCAACTAGGT-ACGAATCTAGATCGATTCACACTT-CAGTTACCAGAG 633
Query 792 GATG-TGCAAAGTCAATTGGTTAGCTTGAATCTGATAAGGAGAAGCCAA-ATGGCCTTAC 849
|| | ||||||| |||||||||||||||||||||||||||| ||| ||| ||| ||||||
Sbjct 634 GA-GATGCAAAGACAATTGGTTAGCTTGAATCTGATAAGGACAAG-CAACATGACCTTAC 691
Query 850 CTCAAGCCATGAGTTCGAGACAGGGCTACAGAAGCGAGAGTGGTTTCCCTCAGGGTCGGC 909
||| |||||||||||||||||||||||||||||||| | | || | |||| || || |
Sbjct 692 CTCGAGCCATGAGTTCGAGACAGGGCTACAGAAGCG-G--T--TT-CTCTCATGGACGAC 745
Query 910 AAATGCAC--CGGCGGGCCTTATCTATGTCTCTTACTTTCtttttttCAAACTACTTCTG 967
||| ||| ||||||||| ||||||||||||| | ||||| ||| ||| || ||||||
Sbjct 746 AAA--CACTTCGGCGGGCCATATCTATGTCTCTAAGTTTCTCTTTA-CAAGCTGCTTCTG 802
Query 968 TTCGGTCAACA 978
|||| || |||
Sbjct 803 TTCGTTCCACA 813
> AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4:5815849-5816922
FORWARD LENGTH=1074
Length=1074
Score = 597 bits (323), Expect = 6e-170
Identities = 705/886 (80%), Gaps = 39/886 (4%)
Strand=Plus/Plus
Query 21 ATGACTATCTTTGCGAGAGATCTCATCTATCAAATCGTTA-CAAGAATTTTGTTGCCGCT 79
||||||||||| | |||||| ||| | ||| ||| || || | |||| ||||| ||
Sbjct 1 ATGACTATCTTCACAAGAGATTTCAGCCATCGGATC-CTAGCATGTGTTTTATTGCCACT 59
Query 80 CTTCCTTTCCCATTATTTGCCTTACGTAACCTGCCAACAAGTGTCGGAATCCGCAGACCG 139
|||||||| ||| | ||||||||||||||| ||||| |||| ||||||||| |||| ||
Sbjct 60 CTTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCG 119
Query 140 CAATaaaaaaaCAAATCTCCCAGCGGAAACGGTAATTGCAATTGTGATT-CTTGCATTAT 198
|||| ||||| || || | | || |||||| || || || ||| | ||
Sbjct 120 CAATGGAAAAAGTAA------AGAGTCATCGATAATTGGGATCGT-TTTGCTTTCGTT-G 171
Query 199 TTATCTCATTAAGCATCGTCGCTTGTTGCTTGCAC-A-ACACATTGTATAGCGCAGAGAT 256
|| ||| ||| | |||| || |||||| || | | |||||| | |||||
Sbjct 172 TT-CCTC-TTACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTAT--TGAAGAGAA 227
Query 257 TGAGGC-GGCAAGCCAAGAAGTGTTGCACACTAGAGCGAGGCACGGGCTTGAGAAGGAAG 315
|||| | || | | || |||||||| |||| ||||| ||||| ||| |||| ||||| |
Sbjct 228 TGAGACAGG-AGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGGACG 286
Query 316 TCATCGAGTCTTTTCCATCTTTCCTTTATTCAGAAGTTAAAG-GACTCAAGACAGGCAAA 374
|||||||||| ||||| ||||||| |||||||| ||||||| | |||||| ||||||
Sbjct 287 TCATCGAGTCCTTTCCGGCTTTCCTATATTCAGAGGTTAAAGCG-TTCAAGATAGGCAAC 345
Query 375 GGCGGAGTAGAATGTGCAGTTTGTCTTA-GTGAGTTTGAGGATC-AAGAAACGCTACGTT 432
|||||||| ||||||||| |||||| || | |||||||| || | |||| |||||||||
Sbjct 346 GGCGGAGTTGAATGTGCAATTTGTC-TATGCGAGTTTGAAGA-CGAAGAGCCGCTACGTT 403
Query 433 GGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCC 492
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||| |
Sbjct 404 GGATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTC 463
Query 493 GATCCACCTG-CCCGGTCTGTCGTGCGAATCTGTCTCAGAAACCCAACGAGAGTTTTCCA 551
| ||||| || ||| ||||| ||||| ||| |||||| ||| || || || ||||||
Sbjct 464 GGTCCACATGTCCC-GTCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCTTTCCA 522
Query 552 TATCCGAACATGGATGTTGAAAC-------G----G-GAGGTGTTCAAGAACCCCCCAAT 599
|||||| |||||||||||||| | | |||||||||||||| ||||| ||
Sbjct 523 CATCCGAGTATGGATGTTGAAACGGGAAATGCACAGAGAGGTGTTCAAGAATCCCCCGAT 582
Query 600 GAGAGAAGCTTGACATGTAATAGTGTGACATGGAATAATAATGCAAATTATACAACACCT 659
||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 583 GAGAGAAGCTTGACAGGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAACACCT 642
Query 660 CGGTCGAGATCTACAGGGTTACCGTCGAACTGGCGTATGGCTGAGATATTCTTCCCTAGA 719
|| || ||||||||||||||| ||||| ||||| | || ||||| ||||| ||||| ||
Sbjct 643 CGATCAAGATCTACAGGGTTATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTCCCTCGA 702
Query 720 TCTCATACGACCGGACATTCATTGGTTCAACTAGGTGAAAATCTAGACCGGTTCACATTG 779
|||||| |||| ||||||||||||||||||| | || | ||| ||||||| |||||| ||
Sbjct 703 TCTCATTCGACTGGACATTCATTGGTTCAACCATGTCAGAATATAGACCGATTCACACTG 762
Query 780 CAATTACCGGAGGATGTGCAAAGTCAATTGGTTAGCTTGAATCTGATAAGGAGAAGCCAA 839
|||||||||||||| |||||||| |||||||| ||| |||| ||||||| |||||||||
Sbjct 763 CAATTACCGGAGGAGGTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGAAGCCAT 822
Query 840 ATGGCCTTACCTCAAGCCATGAGTTCGAGACAGGGCTACAGAAGCG 885
|| |||||||||| ||||| |||||| |||||||||||||| ||||
Sbjct 823 ATAGCCTTACCTCGAGCCAGGAGTTCTAGACAGGGCTACAGGAGCG 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5