BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942697
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5... 3559 0.0
> AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5816942-5821037
REVERSE LENGTH=2381
Length=2381
Score = 3559 bits (1927), Expect = 0.0
Identities = 2124/2220 (96%), Gaps = 10/2220 (0%)
Strand=Plus/Plus
Query 4 TTCGTCTCTTACGGTGGAGATGGAGGAGGAAGAGTCTCCGGCGACGGCGATTGCACCGAG 63
|||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 14 TTCGTCTCTTACGGCGGAGATGGAGGAGGAAGAATCTCCGGCGACGACGATTGTACCGAG 73
Query 64 AGAACCACCGAAGATTCAACGCCTAGAGGAATCAGTGGTCAACCGTATCGCAGCTGGTGA 123
||| |||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 74 AGAGCCACCGAAGATTCAACGCTTAGAAGAATCAGTAGTCAACCGTATCGCAGCTGGTGA 133
Query 124 AGTAATCCAGCGTCCAGTTTCAGCGGTGAAGGAGCTCGTTGAGAACAGCCTCGACGCCGA 183
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 134 AGTAATCCAGCGTCCAGTTTCAGCTGTGAAAGAGCTCGTTGAGAACAGCCTCGACGCCGA 193
Query 184 TTCAAGTTCCATAAGCGTAGTTGTTAAAGACGGTGGATTGAAACTCATTCAAGTCTCCGA 243
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 194 TTCAAGTTCCATAAGCGTCGTTGTCAAAGACGGTGGTTTGAAACTCATTCAAGTCTCCGA 253
Query 244 CGACGGTCACGGTATTAGACGTGACGACTTGCCGATATTATGCGAGAGACATACGACATC 303
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 254 CGACGGTCACGGTATTAGACGTGAAGACTTGCCGATACTATGCGAGAGACATACAACATC 313
Query 304 GAAGCTGACTAAGTATGAGGATTTGTTTTCTTTGAGTTCAATGGGATTTAGAGGAGAGGC 363
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 314 GAAGCTGACTAAGTTTGAGGATTTGTTCTCTCTGAGTTCAATGGGATTTAGAGGAGAGGC 373
Query 364 ATTGGCCAGTATGACTTATGTTGCTCATGTTACAGTAACTACAATTACTAAAGGCCAGAT 423
||| || |||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 374 ATTAGCTAGTATGACCTATGTTGCTCATGTTACAGTGACTACTATTACTAAAGGCCAGAT 433
Query 424 TCATGGTTACAGAGTGTCTTATAGAGATGGTGTCATGGAGAATGAACCAAAGGCGTGTGC 483
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 434 TCATGGTTATAGAGTGTCTTATAGAGATGGTGTCATGGAGCATGAACCAAAGGCGTGTGC 493
Query 484 AGCTGTTAAAGGAACACAGATAATGGTGGAGAATTTGTTCTACAATATGACTGCTAGAAG 543
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 494 TGCTGTCAAAGGAACACAGATAATGGTGGAGAATTTGTTCTACAATATGATTGCTAGAAG 553
Query 544 GAAGACACTTCAAAATTCTGCTGATGATTATGGGAAAATAGTAGACTTGCTAAGTCGGAT 603
|||||||||||||||||||||||||||||| |||||||| || || ||||| || |||||
Sbjct 554 GAAGACACTTCAAAATTCTGCTGATGATTACGGGAAAATCGTGGATTTGCTGAGCCGGAT 613
Query 604 GGCTATTCATCACAATAATGTCAGCTTTTCTTGTCGAAAGCATGGAGCTGTTAAGGCTGA 663
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGCTATTCATTACAATAATGTCAGCTTTTCTTGTCGAAAGCATGGAGCTGTTAAGGCTGA 673
Query 664 TGTTCACTCAGTCGTGTCGCCATCAAGGCTTGATTCCATCAGATCTGTTTATGGAGTATC 723
|||||||||||||||||| || |||||||||||||| || || ||||| |||||||||||
Sbjct 674 TGTTCACTCAGTCGTGTCACCTTCAAGGCTTGATTCAATTAGGTCTGTATATGGAGTATC 733
Query 724 AGTTGCAAAGAACTTGATGAAAGTAGAAGTTTCCTCCTGTGAC-CCTTCCGGTTGTACTT 782
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 734 AGTTGCAAAGAACTTGATGAAAGTAGAAGTTTCCTCCTGTGACTCC-TCTGGTTGTACTT 792
Query 783 TTGATATGGAGGGTTTCATATCCAATTCAAACTATGTTGCTAAGAAGACCATATTGGTGC 842
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 793 TTGATATGGAGGGTTTCATATCCAATTCTAACTATGTTGCTAAGAAGACTATATTGGTGC 852
Query 843 TTTTCATTAATGATAGATTGGTGGAATGCTCTGCCTTAAAAAGAGCCATTGAGATTGTTT 902
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 TTTTCATTAATGATAGATTGGTGGAATGCTCTGCCTTAAAAAGAGCCATTGAAATTGTTT 912
Query 903 ATGCTGCAACATTACCAAAAGCATCGAAACCTTTTGTCTACATGTCAATCATTTTGCCAC 962
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 913 ATGCTGCAACATTGCCAAAAGCATCAAAACCTTTTGTCTACATGTCAATCAATTTGCCAC 972
Query 963 GGGAACATGTTGATATCAATATTCACCCAACAAAGAAAGAGGTTAGCCTACTAAACCAGG 1022
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 973 GGGAACATGTTGATATCAATATTCACCCAACAAAGAAAGAGGTTAGCCTTCTAAACCAGG 1032
Query 1023 AAATCATTATTGAGATGATACAGTCAGAGGTTGAAGTAAAACTGAGAAACGCAAATGATA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 AAATCATTATTGAGATGATACAGTCAGAGGTTGAAGTAAAACTGAGAAACGCAAATGATA 1092
Query 1083 CTAGGACGTTTCAAGAGCAGAAAGTGGAATACATTCAATCTACGTTAACATCCCCA-AGA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 1093 CTAGGACGTTTCAAGAGCAGAAAGTGGAATACATTCAATCTACGTTAACAT-CTCAGAAA 1151
Query 1142 AGTGATTCTACAGTTTCTCAGAAGCTTTCTGGACAAAAAACACAGAAAGTTCCTGTGAAC 1201
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1152 AGTGATTCTCCAGTTTCTCAGAAGCCTTCTGGACAAAAGACACAGAAAGTTCCTGTGAAC 1211
Query 1202 AAAATGGTGAGAACAGATTCATCAGATCCAGCTGGAAGGTTACATGCCTTTTTGCAACCC 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AAAATGGTGAGAACAGATTCATCAGATCCAGCTGGAAGGTTACATGCCTTTTTGCAACCC 1271
Query 1262 AAGCCACATAA-TCTCCCTGACAAGGTTTCTAGTCTGAGTGTAGTTAGGTCTTCGGTAAG 1320
|||||||| || |||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1272 AAGCCACA-AAGTCTCCCTGACAAGGTTTCTAGTTTGAGTGTAGTAAGGTCTTCTGTAAG 1330
Query 1321 GCAAAGAAGAAACCCAAAGGAAACTGCTGATCTTTCTAGTGTCCAAGAACTTATTGCTGG 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1331 GCAAAGAAGAAACCCAAAGGAAACTGCTGATCTTTCTAGTGTCCAGGAACTTATTGCTGG 1390
Query 1381 AGTTGACAGCTGCTGCCATCCAGGTTTGCTGGAGACTGTGAGGAATTGCACATATGTTGG 1440
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1391 AGTTGACAGCTGCTGCCATCCAGGTATGCTGGAGACTGTAAGGAATTGCACATATGTTGG 1450
Query 1441 AATGGCAGATGATGTTTTTGCTTTAGTTCAGTATAACACCCATCTATATCTAGCAAATGT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 AATGGCAGATGATGTTTTTGCTTTAGTTCAGTATAACACCCATCTATATCTAGCAAATGT 1510
Query 1501 GGTGAACCTCAGCAAAGAGCTTATGTATCAGCAAACTCTTCGTCGTTTTGCTCATTTTAA 1560
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1511 GGTGAATCTCAGCAAAGAGCTAATGTATCAGCAAACTCTTCGTCGTTTTGCTCATTTTAA 1570
Query 1561 TGCAATACAGCTTAGCGATCCAGCCCCTCTGTCCGAGTTGATATTGTTGGCTCTGAAAGA 1620
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1571 CGCAATACAGCTTAGCGATCCAGCCCCTTTGTCAGAGTTGATATTGTTGGCTCTGAAAGA 1630
Query 1621 GGAGGATCTAGATCCA-GAAACTGATA-AAAATGATGATTTGAAAGAAAGAATCGCTGAA 1678
|||||||||||||||| |||| ||||| |||| |||||| ||||||||||||| ||||||
Sbjct 1631 GGAGGATCTAGATCCAGGAAA-TGATACAAAA-GATGATCTGAAAGAAAGAATTGCTGAA 1688
Query 1679 ATGAATACAGAACTCCTCAAGGAAAAAGCGGAAATGTTAGAGGAGTATTTCAGCGTTTAC 1738
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1689 ATGAATACAGAACTCCTCAAGGAAAAAGCAGAAATGTTAGAGGAGTATTTCAGCGTGCAC 1748
Query 1739 ATTGACTCCAATGGAAATTTGTCACGGCTTCCTGTCATACTCGACCAGTATACACCTGAC 1798
|||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1749 ATTGACTCCAGTGCAAATTTGTCAAGGCTTCCTGTGATACTCGACCAGTATACACCTGAC 1808
Query 1799 ATGGATCGTGTTCCCGAATTTTTACTATGCTTGGGAAATGATGTTGAGTGGGAAGATGAG 1858
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 ATGGATCGTGTTCCTGAATTTTTACTATGCTTGGGAAATGATGTTGAGTGGGAAGATGAG 1868
Query 1859 AAGAGTTGCTTTCAAGGAGTTTCTGCGGCTATTGGGAACTTTTACGCCATGCATCCTCCT 1918
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1869 AAGAGTTGCTTTCAAGGAGTTTCTGCAGCTATTGGGAACTTTTACGCCATGCATCCTCCT 1928
Query 1919 CTTTTGCCAAATCCATCGGGTGACGGTATTCAGTTCTATACTAAGAGAGGTGAGAGCTCT 1978
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1929 CTTTTGCCAAACCCATCGGGTGACGGTATTCAGTTCTATAGTAAGAGAGGTGAGAGCTCT 1988
Query 1979 CAGGAAAAGTCAGATTTAGAGGGTAACGTCGAGATGGAGGATAATCTTGACAAAGATCTT 2038
|||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 1989 CAGGAAAAGTCAGATTTAGAGGGTAACGTCGATATGGAGGACAATCTTGACCAAGATCTT 2048
Query 2039 CTGTCAGATGCTGAAAACGCATGGGCACAACGTGAATGGTCAATCCAACACGTGCTGTTT 2098
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2049 CTGTCAGATGCTGAAAACGCATGGGCACAACGTGAATGGTCAATCCAACACGTGTTGTTT 2108
Query 2099 CCGTCAATGAGATTGTTCTTGAAGCCACCAGCTTCCATGGCTTCAAATGGGACTTTTGTA 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 CCGTCAATGAGATTGTTCTTGAAGCCACCAGCTTCCATGGCTTCAAATGGGACTTTTGTA 2168
Query 2159 AAGGTAGCATCCCTTGAAAAGCTGTACAAGATATTCGAACGATGCTAGTTGAAATCGCTG 2218
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2169 AAGGTAGCATCCCTTGAAAAGCTGTACAAGATATTCGAACGATGCTAACTGAAACCGCTG 2228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110491399545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5