BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942700
Length=262
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09153.1 | Symbols: LCR36 | low-molecular-weight cysteine-ri... 235 1e-61
> AT4G09153.1 | Symbols: LCR36 | low-molecular-weight cysteine-rich
36 | chr4:5835095-5835412 FORWARD LENGTH=231
Length=231
Score = 235 bits (127), Expect = 1e-61
Identities = 201/234 (86%), Gaps = 15/234 (6%)
Strand=Plus/Plus
Query 21 ATGGCCAAAATATCATGTTCTTATTTCCTCATACTCATGCTTG-TTT-T--G-----TCA 71
||||| || ||||||||||||||||| |||||||| ||||||| ||| | | |||
Sbjct 1 ATGGCTAAGATATCATGTTCTTATTTACTCATACTTATGCTTGCTTTGTCAGTTTTTTCA 60
Query 72 GTTGTTGAGAAGGTTAAGGGAGATAAACGTTGTACTCTAATCATTGATCTATCTCCATGT 131
||||||||||||| |||||||||||| ||||||| | ||||||||||||| |||||||||
Sbjct 61 GTTGTTGAGAAGGCTAAGGGAGATAAGCGTTGTAGTATAATCATTGATCTTTCTCCATGT 120
Query 132 TACCCTGA-TGATTGTCGTCTAAAC-TGTTA-TGCGGAGCGCAATGGAGTTGGAGAATGT 188
|||||| | ||| |||||||| | | || | | | ||||||||||||| ||||||||||
Sbjct 121 TACCCT-ATTGAATGTCGTCT-ATCATG-CATTACCGAGCGCAATGGAGATGGAGAATGT 177
Query 189 ATTGCATCCAAAGTTGGTAGTACTCCTAATTGTGTGTGTACTTATGATTGTTAA 242
||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 GTTGTATCCAAAGTTGGTAGTACTCCTAATTGTTTGTGTACTTATGATTGTTAA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11963724262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5