BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942705
Length=2035
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43722.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 815 0.0
AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 813 0.0
AT4G05526.1 | Symbols: | transposable element gene | chr4:2811... 645 0.0
AT3G42875.1 | Symbols: | transposable element gene | chr3:1495... 601 1e-170
AT4G06614.1 | Symbols: | transposable element gene | chr4:3730... 527 2e-148
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 357 2e-97
AT5G28664.1 | Symbols: | transposable element gene | chr5:1068... 351 1e-95
AT5G01080.1 | Symbols: | Beta-galactosidase related protein | ... 121 3e-26
AT1G30784.1 | Symbols: | Pseudogene of AT5G01080; beta-galacto... 121 3e-26
> AT1G43722.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G28730.1);
Has 924 Blast hits to 912 proteins in 109 species: Archae
- 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:16496403-16497377
FORWARD LENGTH=975
Length=975
Score = 815 bits (441), Expect = 0.0
Identities = 534/580 (92%), Gaps = 2/580 (0%)
Strand=Plus/Plus
Query 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCA 1220
|||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 31 GAAAGAATTGAACTGTGGAATTTGGAAAATAAACAATTTGAAGAGTTAGTGATTCAACCA 90
Query 1221 GCTTTGACTTATTATGATCGATATTTTCAAAGAGCACCGGTCCAAACCGATGGAGGTTTG 1280
|| |||| ||||||||| |||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 91 GCGTTGAATTATTATGACCGATATTTTCAAAGAGCACCAGTCCAAATTGATAGAGGTTTG 150
Query 1281 GGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATTA 1340
|||||||||||||| ||||||||| |||| ||||||| |||||| |||||||||||||||
Sbjct 151 GGATGGAGAAATATATGGCGTCGACTACAGCAAGATGCTGCTGCTTGTCTTCAGTTATTA 210
Query 1341 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATATTGCAGACAAATTACGGTCTA 1400
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||
Sbjct 211 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAAACAAATTATGATCTT 270
Query 1401 CAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGA 1460
|| || ||| | |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 271 CAGCCTACATTGAATATAAGTATTGAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGG 330
Query 1461 CACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCA 1519
|||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 331 CACAATGAAGTTTATAGAGATGTTGGTTTAAGATTTGGAC-GAAATCAAGAAACTGTGCA 389
Query 1520 GAGAAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAAC 1579
||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 390 AAGAAAATTTAGAGAAGTTCTTACGGCAACTGAATTATTAGCATGTGATTATATTAGAAC 449
Query 1580 TCCAACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCGGAGATATTG 1639
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 450 TCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCAAAGATATTG 509
Query 1640 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCGTAAAAGTAAA 1699
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 510 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGTACTCATGTATGCGTAAAAGTAAA 569
Query 1700 GCTTGAGTTACAAGGAATGTATTGGAATCGACACGATAAT 1739
|| ||| ||||| |||||||||||||||||||||||||||
Sbjct 570 GCCTGACTTACAGGGAATGTATTGGAATCGACACGATAAT 609
> AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:15803993-15806948 FORWARD
LENGTH=2956
Length=2956
Score = 813 bits (440), Expect = 0.0
Identities = 534/580 (92%), Gaps = 3/580 (1%)
Strand=Plus/Plus
Query 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCA 1220
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2040 GAAAGAATTGAATTGTGGAATTTGGAAAATGAACAATTTGAAGAGTTAGTAATTCAACCA 2099
Query 1221 GCTTTGACTTATTATGATCGATATTTTCAAAGAGCACCGGTCCAAACCGATGGAGGTTTG 1280
||||||| ||||||||| ||||| |||||||||||||| || ||||| ||| ||| ||||
Sbjct 2100 GCTTTGAATTATTATGACCGATA-TTTCAAAGAGCACCCGTTCAAACTGATAGAGATTTG 2158
Query 1281 GGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATTA 1340
|||||||||||||| |||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct 2159 GGATGGAGAAATATATGGCGTCGGCTACAGCAAGATGATGCTGCTTGTCTTCAATTATTA 2218
Query 1341 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATATTGCAGACAAATTACGGTCTA 1400
||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 2219 CGGATGTCACTTCCATGTTTCACGACATTGTGTAATATGTTGCAAACAAATTATGGTCTT 2278
Query 1401 CAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGA 1460
|| |||||| | |||||||| ||| |||||||||| || ||||||||||||||||||||
Sbjct 2279 CAGCCAACATTGAATATAAGTATTAAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGG 2338
Query 1461 CACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCA 1519
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2339 CACAATGAAGTTCAAATAGATGTTGGTTTAAGATTTGGACA-AAATCAAGAAACTGTGCA 2397
Query 1520 GAGAAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAAC 1579
||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 2398 AAGAAAATTTAGAGAAGTTCTTACGGAAACTGAATTATTAGCATGTGATTATATTAGAAC 2457
Query 1580 TCCAACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCGGAGATATTG 1639
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2458 TCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAAGTAGACCGAAGATATTG 2517
Query 1640 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCGTAAAAGTAAA 1699
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 2518 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGGACACATGTGTGCGTAAAAGTAAA 2577
Query 1700 GCTTGAGTTACAAGGAATGTATTGGAATCGACACGATAAT 1739
|| ||||||||| |||||||||||||||||||||||||||
Sbjct 2578 GCCTGAGTTACAGGGAATGTATTGGAATCGACACGATAAT 2617
> AT4G05526.1 | Symbols: | transposable element gene | chr4:2811266-2814539
FORWARD LENGTH=3274
Length=3274
Score = 645 bits (349), Expect = 0.0
Identities = 511/588 (87%), Gaps = 16/588 (3%)
Strand=Plus/Plus
Query 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAA-GAGTTAGTAATTCAACC 1219
|||||| ||||||||||||| |||||||| || |||||| || |||||| |||| || ||
Sbjct 2048 GAAAGACTTGAATTGTGGAAATTAGAAAATGAGCAATTT-AAGGAGTTAATAATCCAGCC 2106
Query 1220 AGCTTTGACTTATTATGATCGATATTTTCAAAGAGCACCGGTC-CAAACCGATGGAGGTT 1278
| |||||| ||| |||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 2107 AACTTTGAGTTACTATGATCGATATTTTCAAAGAGCACCAG-CGCAAACCGATGGAGGTT 2165
Query 1279 TGGGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTAT 1338
| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 2166 TAGGATGGAGAAATATTTGGCATCGACTACAACAAGATGATGCTGCTTGTCTTCAGTTAT 2225
Query 1339 TACGGATGTCACTTC-CATG--TTTCACAACATTGTGTAATATATTGCAGACAAATTACG 1395
|||| ||||||| || || | ||| ||||||||||| | | | | || ||||||||||
Sbjct 2226 TACGAATGTCAC-TCACA-GCATTT-ACAACATTGTGCAGTCTGCTACAAACAAATTACG 2282
Query 1396 GTCTACAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATAT 1455
||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||
Sbjct 2283 GTCTACAACCAACACTAAATATAAGCATTGAGGAATGTGTGGCTATGTTTTTACGAATAT 2342
Query 1456 GTGGACACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACT 1514
|||| || |||||||||||||||||||||||||| |||||||| | |||||||||| ||
Sbjct 2343 GTGGGCATAATGAAGTTCAAAGAGATGTTGGTTTGAGATTTGGGC-GAAATCAAGAGACC 2401
Query 1515 GTGCAGAGAAAATTTAGG-GAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATAT 1573
||| ||||||||||| || |||||||||||||| ||||||||| | ||||||||||||||
Sbjct 2402 GTGAAGAGAAAATTT-GGAGAAGTTCTTACGGCAACTGAATTACTAGCATGTGATTATAT 2460
Query 1574 CAGAACTCCAACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCGGAG 1633
|||||||||| || ||||| || |||||| || ||| | |||||| ||||| || ||
Sbjct 2461 TAGAACTCCAAAAACTCAAGATCTACATCGAAATCTTGAGATACTTCAAGTAGATCGAAG 2520
Query 1634 ATATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCGTAAA 1693
| |||| ||||||||||||||||| ||||||||||||||||| ||| |||| || |||||
Sbjct 2521 AAATTGACCATATTTTAGTGGATTTGTTGGAGCTATGGATGGGACTTATGTTTGTGTAAA 2580
Query 1694 A--GTAAAGCTTGAGTTACAAGGAATGTATTGGAATCGACACGATAAT 1739
| || |||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 2581 AAAGTGAAGCCTGAATTACAAGGAATATATTGGAATCGACACGATAAT 2628
> AT3G42875.1 | Symbols: | transposable element gene | chr3:14951431-14952669
FORWARD LENGTH=1239
Length=1239
Score = 601 bits (325), Expect = 1e-170
Identities = 502/583 (86%), Gaps = 29/583 (5%)
Strand=Plus/Plus
Query 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCA 1220
||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 47 GAAAGAATTGAGTTGTGGAATTTGGAAAACGAACAATTTGAAAAGTTAGTAGTTCAACCA 106
Query 1221 GCTTTGACTTATTATGATCGATATTTTCAAAGAGCACCGGTCCAAACCGATGGAGGTTTG 1280
||||||| ||||||||| || |||||||||| || || |||||||| ||| || |||||
Sbjct 107 GCTTTGAATTATTATGAACGGTATTTTCAAAAAG-TCCAGTCCAAACTGATAGATGTTTG 165
Query 1281 GGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATTA 1340
|||||||||||||| ||||||||| |||| |||||||||||||| || ||||||||||||
Sbjct 166 GGATGGAGAAATATATGGCGTCGACTACAGCAAGATGATGCTGCTTGACTTCAGTTATTA 225
Query 1341 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATATTGCAGACAAATTACGGTCTA 1400
| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 226 CTGATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAAACAAATTATGGTCTT 285
Query 1401 CAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGA 1460
|| |||||| | |||||||| ||||||||||| || || ||||||||||| |||||||||
Sbjct 286 CAGCCAACATTGAATATAAGTATTGAAGAAAGAGTTGCGATGTTTCTACGAATATGTGGA 345
Query 1461 CACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCA 1519
|||||| ||||||| ||||| | ||||||||||||||| | ||||| |||| | ||||||
Sbjct 346 CACAATCAAGTTCAGAGAGACGATGGTTTAAGATTTGGAC-GAAATAAAGAGATTGTGCA 404
Query 1520 GAGAAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAAC 1579
|||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 405 GAGAAAGTTTAGAGAAGTTCTTACGGCAACTGAATTATTAGCATGTGAATATATTAGAAC 464
Query 1580 TCC-AACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCGGAGATATT 1638
||| || |||||||||| ||| | | | | || | ||| | | | | | ||||
Sbjct 465 TCCGAA-AAGACAAGAA-TTT-T--A-T-C--GA--G--TTCCG--A-A--G-A--TATT 503
Query 1639 GGCCATATTTTAGTGGATTCGTTGGAGCTA-TGGATGGAACTCATGTATGCGTAAAAGTA 1697
||| |||||||||||| ||||||||||||| || |||| |||||||||||| ||||||||
Sbjct 504 GGCTATATTTTAGTGGGTTCGTTGGAGCTAATG-ATGGGACTCATGTATGCTTAAAAGTA 562
Query 1698 AAGCTTGAGTTACA-AGGAATGTATTGGAATCGACACGATAAT 1739
||| |||||||| | || ||||||||||||||||| |||||||
Sbjct 563 AAGTTTGAGTTATAGAG-AATGTATTGGAATCGACCCGATAAT 604
> AT4G06614.1 | Symbols: | transposable element gene | chr4:3730027-3731235
FORWARD LENGTH=1209
Length=1209
Score = 527 bits (285), Expect = 2e-148
Identities = 489/587 (83%), Gaps = 16/587 (3%)
Strand=Plus/Plus
Query 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCA 1220
|||||| ||||||||||||||||||| | || ||||||| |||||| ||||||| |||
Sbjct 55 GAAAGAGCTGAATTGTGGAATTTAGAAGATGAGTAATTTGAGGAGTTAATAATTCAGCCA 114
Query 1221 GCTTTGACTTATTATGATCGATATTTTC-AAAGAGCACCGGTCCAAACCGATGGAGGTTT 1279
|||||| ||| |||||| ||| |||| |||||||||| | |||| ||||||||| |
Sbjct 115 ACTTTGAGTTACCATGATCAATA-TTTCGAAAGAGCACCAATGCAAATTGATGGAGGTAT 173
Query 1280 GGGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATT 1339
||||||||||||||||||| |||| ||||| |||||| || ||| ||||||||||||||
Sbjct 174 AGGATGGAGAAATATTTGGCATCGACTACAATAAGATGTTGTTGCTTGTCTTCAGTTATT 233
Query 1340 ACGGATGTCACTTC-CATG-TTTCACAACATTGTGTAATATATTGCAGACAAATTACGGT 1397
||| ||||||| || || | |||||||||||||| | | | || || ||||||||| |
Sbjct 234 ACGAATGTCAC-TCACA-GCATTCACAACATTGTGCAGTCTGTTACAAACAAATTACAAT 291
Query 1398 CTACAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGT 1457
||| ||||||||||| |||||||||||||| ||| ||| ||||||||| ||| ||| ||
Sbjct 292 CTATAACCAACACTATATATAAGCATTGAAAAAAATGTTGCTATGTTTTTACAAATAAGT 351
Query 1458 -GGACACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTG 1515
|| ||||||||||||||||||||||||||||| |||||||| | |||||||||| || |
Sbjct 352 AGG-CACAATGAAGTTCAAAGAGATGTTGGTTTGAGATTTGGAC-GAAATCAAGAGACCG 409
Query 1516 TGCAGAGAAAATTTAGGGAAG-TTCTTACGGCTACTGAATTATTGGCATGTGATTATATC 1574
|| ||||||||||| |||||| || |||| | ||||||||||| |||| | |||||||
Sbjct 410 TGAAGAGAAAATTTGGGGAAGGTT-TTACAACAACTGAATTATTAGCATCTAATTATATT 468
Query 1575 AGAACTCCAACAAGACAAGAACTTTA--TCGAATTCCTGAAAGACTTCAGGTAGACCGGA 1632
||||||||||||| ||||| |||| || |||| |||| |||||| | ||| | | |
Sbjct 469 AGAACTCCAACAACTCAAGA--TTTACATCTAATTACTGAGAGACTTGAAGTATATTGAA 526
Query 1633 GATATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCGTAA 1692
||||||| | |||||||||||||| |||||||||||||||| |||||||| || ||||
Sbjct 527 GATATTGACTTTATTTTAGTGGATTTATTGGAGCTATGGATGGGACTCATGTTTGTGTAA 586
Query 1693 AAGTAAAGCTTGAGTTACAAGGAATGTATTGGAATCGACACGATAAT 1739
|||| |||| | | ||||||||||||||||||||| |||||||||||
Sbjct 587 AAGTGAAGCCTAAATTACAAGGAATGTATTGGAATTGACACGATAAT 633
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 357 bits (193), Expect = 2e-97
Identities = 462/589 (78%), Gaps = 30/589 (5%)
Strand=Plus/Plus
Query 1164 AGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCAG-C 1222
||||||||||| || ||||| ||||| || ||| ||||| ||||| |||||||||| | |
Sbjct 47 AGAATTGAATTATGAAATTTGGAAAATGAGCAAATTGAACAGTTAATAATTCAACC-GTC 105
Query 1223 TTTGACTTATTATGATCGATA-TTTTCAAAGAGCACCGGTCCAAACCGATGGAGGTTTGG 1281
|||| || || ||||| | |||| |||||| ||| | ||||| ||||| || |||
Sbjct 106 ATTGAGTTGCTACAATCGA-ACTTTTGAAAGAGGACCAATTCAAACAGATGGCGGGATGG 164
Query 1282 GATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATTAC 1341
|||||| ||||| |||||||||| ||||| ||||| | ||||| | |||||| ||| |||
Sbjct 165 GATGGAAAAATACTTGGCGTCGAATACAAGAAGATAAGGCTGCTTATCTTCAATTACTAC 224
Query 1342 GGATGTCACTTCCA-TGTTTCACAACATTGTGTAATATATTGCAGACAAATTACGG-TCT 1399
| ||||| | | | ||||| | | |||| ||| | ||| || | |||| ||| || | |
Sbjct 225 GAATGTCTC-TGGATTGTTTTAGATCATTATGTGACATAATGGAAACAAGTTATGGAT-T 282
Query 1400 ACA-ACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTG 1458
| | || ||| | ||| | || |||||||| ||||| || |||||| ||||||||||||
Sbjct 283 A-ATTCCTACAATGAATGTTAGTATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTG 341
Query 1459 GACACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTG 1517
|||||||||||||||||||||||||||| ||| ||||||| | ||| |||||||| |||
Sbjct 342 GACACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTGGAC-GAACGCAAGAAACAGTG 400
Query 1518 CAG-AGAAAATTTAGGGAAGTTCTTACG-GCTAC-T-GAATTA-TTGGCATGTGATTATA 1572
| ||||| ||| | |||| |||| | || || | || | | ||| | ||||||||||
Sbjct 401 AATCAGAAATTTTTTG-AAGTCCTTA-GAGCGACATAGA-T-ACTTG-CTTGTGATTATA 455
Query 1573 TCAGAACTCCAACAAGACAAGAACTTTATCGAATTCCTGAA-AGACT-TCAGGTAGACCG 1630
||| ||| ||||||| ||||||||| ||||||||||||| | ||| | | | || |
Sbjct 456 TCAAAACGCCAACAACACAAGAACTACGTCGAATTCCTGAATA-ACTATAAA-TGGATCA 513
Query 1631 GAGA-TATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCG 1689
| | |||||| |||||||||||||||| ||||||| ||| ||||| ||||||||| |
Sbjct 514 -ACAATATTGGTCATATTTTAGTGGATTTGTTGGAGGTATAAATGGAGTTCATGTATGTG 572
Query 1690 TAAAAGTAAAGC-TTGAGTTACAAGGAATGTATTGGAATCGACACGATA 1737
| || || |||| || | | |||||||||||||||||||||||||||||
Sbjct 573 TTAAGGTGAAGCATTAACT-ACAAGGAATGTATTGGAATCGACACGATA 620
> AT5G28664.1 | Symbols: | transposable element gene | chr5:10687264-10688628
REVERSE LENGTH=1365
Length=1365
Score = 351 bits (190), Expect = 1e-95
Identities = 254/285 (89%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 1740 AAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCACATTCAAAAAAGAGT- 1798
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1033 AAAAAATGGAGAATTATTTCTGATTTTCCAAGATATAATGTTCACATTCAAAAAAGAGTG 1092
Query 1799 AGTAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGATGCAGA 1858
| ||||||||||| || ||||||||||||| || |||| ||||||||| | ||| ||||
Sbjct 1093 A-TAATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAATTTTTTGGATTCAGA 1151
Query 1859 TTTCGCAGATGTAGTGACAGAAACAAATATAAACAATGGAGATTTTGAGCATGATGTAGG 1918
||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1152 TTTTGTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTTTGAGCATGATGTAAG 1211
Query 1919 TGACATGGATGCAGCAGAATTAGCAGATGGAGAACATATGACGGAAATAAAAGACAATAT 1978
||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||
Sbjct 1212 CGACATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATAT 1271
Query 1979 TGCAAATATGTTATGGGAAAATCAAAATAATAGATAATACttttt 2023
|| |||||| |||||| ||||||||| || | ||||||| |||||
Sbjct 1272 TGAAAATATTTTATGGAAAAATCAAAGTAGTCGATAATA-TTTTT 1315
> AT5G01080.1 | Symbols: | Beta-galactosidase related protein
| chr5:28532-29086 REVERSE LENGTH=555
Length=555
Score = 121 bits (65), Expect = 3e-26
Identities = 141/177 (80%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 484 TGTTGCTATGTTGGTTCAAGATT-TAT-TTGAGAACCCTGCCTTTAGAACCACCTAGTTG 541
||||||| ||||||| | | ||| ||| | ||||||||||||||| ||| ||||||| |
Sbjct 2 TGTTGCTTTGTTGGTAC-A-ATTATATCTCGAGAACCCTGCCTTTCGAAGCACCTAG-AG 58
Query 542 -TATTATCCATGAATTTAAAAGCTTGAAGAAGGACGGCATTATGATCCCGTCTCTA-AGG 599
||| | ||| || ||||| |||||||| |||||| |||||||||||||| | | |
Sbjct 59 AGATTTTTCATAAAACCAAAAGAGTGAAGAAGAACGGCACTATGATCCCGTCTCCACA-G 117
Query 600 AGCGGTGATTACCAAAACTTCTTCAACTTTTCATCCCCACTTCATCTGTTTACCGAG 656
||||||||||||| | ||| ||||||| ||||||||| |||| | || ||| ||||
Sbjct 118 AGCGGTGATTACCGTAGCTTTTTCAACTCTTCATCCCCGCTTCCTTTGATTATCGAG 174
> AT1G30784.1 | Symbols: | Pseudogene of AT5G01080; beta-galactosidase
| chr1:10929536-10930090 REVERSE LENGTH=555
Length=555
Score = 121 bits (65), Expect = 3e-26
Identities = 141/177 (80%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 484 TGTTGCTATGTTGGTTCAAGATT-TAT-TTGAGAACCCTGCCTTTAGAACCACCTAGTTG 541
||||||| ||||||| | | ||| ||| | ||||||||||||||| ||| ||||||| |
Sbjct 2 TGTTGCTTTGTTGGTAC-A-ATTATATCTCGAGAACCCTGCCTTTCGAAGCACCTAG-AG 58
Query 542 -TATTATCCATGAATTTAAAAGCTTGAAGAAGGACGGCATTATGATCCCGTCTCTA-AGG 599
||| | ||| || ||||| |||||||| |||||| |||||||||||||| | | |
Sbjct 59 AGATTTTTCATAAAACCAAAAGAGTGAAGAAGAACGGCACTATGATCCCGTCTCCACA-G 117
Query 600 AGCGGTGATTACCAAAACTTCTTCAACTTTTCATCCCCACTTCATCTGTTTACCGAG 656
||||||||||||| | ||| ||||||| ||||||||| |||| | || ||| ||||
Sbjct 118 AGCGGTGATTACCGTAGCTTTTTCAACTCTTCATCCCCGCTTCCTTTGATTATCGAG 174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100852894905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5