BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942709
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09340.1 | Symbols: | SPla/RYanodine receptor (SPRY) domain... 2052 0.0
> AT4G09340.1 | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing
protein | chr4:5924602-5927635 REVERSE LENGTH=1795
Length=1795
Score = 2052 bits (1111), Expect = 0.0
Identities = 1278/1359 (94%), Gaps = 10/1359 (1%)
Strand=Plus/Plus
Query 3 TATATTCTCTGCGATTTGAATGAACAAATCCAACTTCATTCACAAATTTCGTCACTCTGC 62
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 20 TATCTTCTCTGCGATTTGAATGAACAAATCCAACTTCATTCACAAATTTCATCACTCTGC 79
Query 63 AAAACCATATAAAATGGAAG---AC---GAAGAAGAAGAATCACCAACGGAGCTAAACAC 116
||||||| ||| |||||||| || ||||||||||||||||| |||||| |||||||
Sbjct 80 AAAACCACATACAATGGAAGATAACGAAGAAGAAGAAGAATCACCGACGGAGTTAAACAC 139
Query 117 GATCAATGGTTTAAGCAGTTTTGTAGTTATCTCTCCCGATAAGCTATCTCTCAAATACAC 176
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GATCACCGGTTTAAGCGGTTTTGTAGTTATCTCTCCCGATAAGCTATCTCTCAAATACAC 199
Query 177 TGGCGTTTCTCAACACGGTCACGATGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCGTG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TGGCGTTTCTCAACACGGTCACGATGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCGTG 259
Query 237 TAATCGTATCGCTTATTACTTCGAGATTTATATCAAAGATGCTGGTGTTAAAGGACGTGT 296
||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 260 TAAACGTTTCGCTTATTACTTCGAGATTTATGTTAAAGATGCTGGTGTTAAAGGACGTGT 319
Query 297 CTCTATTGGTTTCACTACTGATAGTTTCAGAATTGCGAGACATCCTGGATGGGAACTCAA 356
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 320 CTCCATTGGTTTCACTACTAATAGTTTCAGAATCGCGAGACATCCTGGATGGGAACTCAA 379
Query 357 CACTTGTGGTTATCATGGTGATGATGGACTTATATATCTTGGAAAACGACAAGGTGAAGC 416
||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||
Sbjct 380 CACTTGTGGTTATCATGGTGAAGATGGGCTTATATATCTAGGAAAACGTCAAGGTGAAGC 439
Query 417 TTTTGGTCCGACTTATACAACCGGTGATACAGTTGGTGGCGGTATAAACTATGATTCGCA 476
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 440 TTTTGGTCCGACTTATACAACTGGTGATACTGTTGGTGGTGGTATAAACTATGATTCGCA 499
Query 477 GGAATTCTTTTTCACCGTAAATGGAACTCTTGTAGGGACAGTCTCGAAGTACATCAAGGG 536
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 500 GGAATTCTTTTTCACTGTAAATGGAACTCTGGTAGGGACAGTCTCCAAGTACATCAAGGG 559
Query 537 TCCTCTATTTCCTACTGTAGCTGTACATAGCCAAAACGAGGAGGTTACCGTCAACTTTGG 596
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 560 TCCTCTATTCCCTACTGTAGCTGTACATAGCCAAAACGAAGAGGTTACAGTCAACTTCGG 619
Query 597 GCAGGAGAAGTTTGCTTTTGACTTTAAGGGATATGAATCATCGGAGAGGAATAAGCAACA 656
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 620 GCAGGAGAAGTTTGCCTTTGATTTTAAGGGATATGAATCATCGGAGAGGAATAAGCAACA 679
Query 657 AATAGCAATTGAAAAGATATCCATACCTTCGAACATGAGTCTTGGGCTTGTAAAGAACTA 716
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 680 AATAGCAATCGAAAAGATATCCATACCATCGAACATGAGTCTTGGGCTTGTAAAGAACTA 739
Query 717 CTTGCTTCATTATGGGTATGAAGAGACTTTTCGTGCTTTAGACTTGGCTACTAACAGTAC 776
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 740 TTTGCTTCATTATGGGTATGAAGAGACTCATCATGCTTTAGACTTGGCTACTAACAGTAC 799
Query 777 AGTTCCTCCTATTAATGGAACTCAAGAAGATGGTATTGAAGATACATCATATGCATTGCA 836
| |||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 800 ACTTCCTCCTATCAATGGAGCTCAAGAAAATGGTATTGATGATACATCATATGCATTGCA 859
Query 837 TGAGAGAAAAAATT-TTAGACAGCTTATAGGGAAGGGTGAGATTGATGCTGCTCTTGCGA 895
||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 860 TGAGAGAAAAA-TTCTTAGACAGCTTATACGGAAGGGTGAGATCGATGCTGCTCTTGCGA 918
Query 896 AACTCCGAGATAGCTATCCCCAACTTGTACAGAACGATAAATCAGAAGTGTGCTTCCTCC 955
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 919 AACTCCGAGATAGCTATCCCCAACTTGTACAGAACGATAAATCAGAAGTATGCTTCCTCC 978
Query 956 TTCACTGTCAAAAGTTCATTGAATTAGTACGGATTGGAGCACTCGAAGAAGCTGTGAAAT 1015
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 979 TTCACTGTCAAAAGTTCATTGAATTAGTACGGATTGGAGCACTAGAAGAGGCTGTGAAAT 1038
Query 1016 ATGGAAGAGTGGAATTAGCCAAATTCCTTGGTTTAGCTGCTTTCCAAGACATTGTAGAGG 1075
||||| || ||||||||||||||||| |||||||| || | |||||||||||| ||||||
Sbjct 1039 ATGGACGAATGGAATTAGCCAAATTCATTGGTTTAACTACATTCCAAGACATTTTAGAGG 1098
Query 1076 ACTGCTTTGCTCTGCTAGTGTATGAACGCCCCCAAGAATCGAATGTAGGGTATTTCCTAG 1135
||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1099 ACTGCTTTGCTTTGCTAGTGTACGAACGCCCCGAAGAATCGAATGTAGGGTATTTCCTAG 1158
Query 1136 AAGAGTCTCAAAGGGAAGTAGTGGCAGACGCAGTGAATGCTGCGATTCTATCTACAAATC 1195
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1159 AAGAGACTCAAAGGGAAGTAGTGGCAGACACAGTGAATGCTGCGATTTTATCTACAAAAC 1218
Query 1196 CAAACAACAAAAATCAATTGCATTCTCATCTAGAGACACTTCTCCGACAGCTAACAGCTT 1255
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1219 CAAAGGGCAAAAATCAATCGCATTCTCATCTAGAGACACTTCTCCGACAACTAACAGCTT 1278
Query 1256 GCTGTCTGGAACTGCGGTCACTTAACGATGGTCAAGGAGAAGCGTTCTCGCTTCACCGGC 1315
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 1279 GCTGTCTGGAACTGCGGTCGCTTAACGATGGTCAAGGAGAAGCGTTCTCGCTTAACCGAC 1338
Query 1316 TTCTTACGA-CCACCAATTGGAAGAGGACAAAAAAGACT 1353
|||||| || ||| |||||||||||||||||||||||||
Sbjct 1339 TTCTTA-GAACCAACAATTGGAAGAGGACAAAAAAGACT 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5