BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942711
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09350.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1134 0.0
> AT4G09350.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr4:5931251-5932152 REVERSE LENGTH=816
Length=816
Score = 1134 bits (614), Expect = 0.0
Identities = 722/773 (93%), Gaps = 12/773 (2%)
Strand=Plus/Plus
Query 21 ATGGCTTATGCAATTTCTACCTATGCTCGAACGTCCTGCATTATCCTTCCCAAAATCCAA 80
||||||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 1 ATGGCTTATGCAACTTCTACCTATGCACGAACCTCATGCATTATCCTACCCAAAATCCAA 60
Query 81 AACGGCACGCATTTTAGGGACGATAC-AAGAGCATTTAGAAGGATAACGGCAAGAAGAGT 139
|||||| ||||||| | ||| || || || |||||||||||||||||| |||||||||||
Sbjct 61 AACGGCGCGCATTTCACGGATGACACGAA-AGCATTTAGAAGGATAACAGCAAGAAGAGT 119
Query 140 GA--CG----TACGCGTCACAAGGCCCGACAAAACC-TCCAAAACCATCGCCAGGAGTAG 192
|| || |||||||||||||||||||| ||||| | |||||||||| ||||||||||
Sbjct 120 GACGCGTATATACGCGTCACAAGGCCCGACTAAACCGT-CAAAACCATCTCCAGGAGTAG 178
Query 193 ACACAAGAATCCACTGGGAAAGCCCGGACGAAGGCTGGATCGGAGGAGGATCCGACCCGA 252
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 ACACAAGAATCCACTGGGAAAGCCCGGACGAAGGCTGGATCGGAGGAAGATCCGACCCGG 238
Query 253 CCAAATCCGTTAATGAGGACAAAACCAATCTCCTTAGTGATGAAAAATTTGCAGAACTAA 312
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 CCAAATCGGTTGATGAGGACAAAACCAATCTCCTTAGTGACGAAAAATTTGCAGAACTAA 298
Query 313 TCAAAGACTCTTTTGATTCTCATTACCAATTCTTAGGTGTTTCAACGGATGCTGATCTAG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCAAAGACTCTTTTGATTCTCATTACCAATTCTTAGGTGTTTCAACGGATGCTGATCTAG 358
Query 373 AAGAGATAAAATCCGCGTACCGAAGATTATCAAAAGAGTATCATCCCGACACAACTTCAT 432
||||||||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 359 AAGAGATAAAATCTGCGTACCGGAGATTATCTAAAGAGTATCATCCAGATACAACTTCAC 418
Query 433 TACCACTTAAAACAGCTTCAGACAAGTTCATGAAACTAAGAGAAGTGTACAATGTTTTGA 492
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 419 TACCACTTAAAACAGCTTCAGAAAAGTTCATGAAATTAAGAGAAGTGTACAATGTTTTGA 478
Query 493 GCGATGAAGAGACTCGGAGGTTCTATGACTGGACATTGGCTCAAGAGGTCGCGAGTCGTC 552
|||||||||||||||||||||| |||||||||||| |||||||||| || ||||||||||
Sbjct 479 GCGATGAAGAGACTCGGAGGTTTTATGACTGGACACTGGCTCAAGAAGTTGCGAGTCGTC 538
Query 553 AAGCTGAGAAGATGAGAATGAAGCTTGAGGATCCGAACGAGCAAGATTTTAGGGGCTATG 612
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 539 AAGCTGAGAAAATGAGAATGAAGCTAGAGGATCCGAAAGAGCAAGATTTTAGGGGCTATG 598
Query 613 AATCAATACCTGATATGGTTGACCGGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATCAATACCTGATATGGTTGACCGGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAG 658
Query 673 CCATGACTGCTCTCACGTTCGATGTTTTGATCATAGTATTCGCGGTTTGTTGTATAG-TG 731
| ||||||||||||||||||||| |||||||| || ||||||| ||||||||||||| |
Sbjct 659 CAATGACTGCTCTCACGTTCGATATTTTGATCGTATTATTCGCTGTTTGTTGTATAGCT- 717
Query 732 TTTGTGCTTGTTTTCAAAGATCCTTCTTACTAGGTAAGGAGCTTTGTATATAC 784
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTGTGATTGTTTTCAAAGATCCTTCTTACTAGGTAAGGAGCTTTGTATATAC 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5