BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942712
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09690.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 239 2e-62
AT4G11550.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 187 6e-47
> AT4G09690.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:6124897-6126120 FORWARD LENGTH=1038
Length=1038
Score = 239 bits (129), Expect = 2e-62
Identities = 177/200 (89%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 27 TCTGAGGAAGTGTCACTACCGTTGATCCACGAGCATCCTATGATACCTTGGAATGATCTG 86
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 7 TCTGAGGGAGTGTCACTACCGTTGATCCACGAGCATCTTATGATACCTTGGAATGACCTG 66
Query 87 CGGAAAGGTGATTGTTGTGGACGTTTGGAAGCTATCAGTGATGGCTATTACTGCAAAAGA 146
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 67 AGGAAAGGTGATTGTTGTGGACGCTTGGAAGCTATCAGTGATGGCTACTATTGCAAAAGC 126
Query 147 TGTGACTTCTTTGTTCACAGGGAATGTA-C--TGAGTCCTCCGAATTTATCAAACACCCA 203
||||| |||||||| |||| | ||||| | ||||| |||||| |||||| ||||||||
Sbjct 127 TGTGATTTCTTTGTCCACAAGAAATGTGGCGATGAGTGCTCCGAGTTTATCGAACACCCA 186
Query 204 TCTCACTCTGTTCACTCTCT 223
| |||||| ||||| ||||
Sbjct 187 TGTCACTCCATTCACACTCT 206
> AT4G11550.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:6996823-6998829 REVERSE LENGTH=2007
Length=2007
Score = 187 bits (101), Expect = 6e-47
Identities = 252/322 (78%), Gaps = 22/322 (7%)
Strand=Plus/Plus
Query 23 GGAATCTGAGGAAGTGTCACTACCGTTGATCCACGAGCATCCTATGATACCTTGGAATGA 82
||||| ||||||||||||||||||||||||||||||||||| |||||| || || ||| |
Sbjct 12 GGAATATGAGGAAGTGTCACTACCGTTGATCCACGAGCATCTTATGATGCCGTGTAATTA 71
Query 83 TCTG-CGGAAAGG-TGATTGTTGTGGACGTTT-GGAAGCTATCAGTGATGGCTATTACTG 139
||| | | || |||||| |||||||| || || || ||||| ||| ||||||||
Sbjct 72 TCTAACT-AG-GGCTGATTGCTGTGGACGCTTCGGTTT-TACCAGTGGTGGTTATTACTG 128
Query 140 CAAAAGATGT-GACTTCTTTGTTCACAGGGAATGTACTGA-G-T-CCTCCGAATTTATCA 195
| |||| ||| | |||||| ||||| ||| ||||| ||| | | |||| |||| |||
Sbjct 129 CGAAAGCTGTAG-CTTCTTGGTTCATAGGAAATGTGTTGAAGATTCCTCTGAATATATTG 187
Query 196 AACACCCATCTCACTCTGTTCACTCTCTTCAGCTTCGAAGTAATAGCCATA--ATAATTA 253
||||||| ||||||||||||||| ||||| |||||| |||||| | ||| | ||| | |
Sbjct 188 AACACCCGTCTCACTCTGTTCACCCTCTTAAGCTTCAAAGTAA-A-CCAGACCATA-T-A 243
Query 254 CTGCAATTTATGTCGA-AAG-GATATCACCCATCTATGTTATCGTTGTGATATCTGTGAC 311
|| || ||||| || ||| | ||| ||||||| |||| |||||| |||||||||
Sbjct 244 -TGTGATATATGT-GATAAGAGG-ATCGTGGATCTATGCTATCATTGTGAGATCTGTGAC 300
Query 312 TTTGAGGTGGATTTATACTGTG 333
|| | |||||| |||||||||
Sbjct 301 TTCAATGTGGATCTATACTGTG 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16889963664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5