BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942719

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77940.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   126    1e-28
  AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative ...   122    1e-27
  AT1G59540.1 | Symbols: ZCF125 | P-loop containing nucleoside tr...   119    2e-26


> AT1G77940.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr1:29303897-29305382 REVERSE LENGTH=652
Length=652

 Score =  126 bits (68),  Expect = 1e-28
 Identities = 77/81 (95%), Gaps = 1/81 (1%)
 Strand=Plus/Plus

Query  47   AATCTCCA-CAATTGCCCACCATTGAGAAGATCAGAGATTGAGTACTACGCAATGCTTGC  105
            |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  235  AATCTCCACCAATTGCCCACCGTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGC  294

Query  106  TAAAGTTGGTGTTCACCATTA  126
            |||||||||||| ||||||||
Sbjct  295  TAAAGTTGGTGTCCACCATTA  315


> AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative 
/ 5-enolpyruvylshikimate-3-phosphate phospholyase, putative 
| chr1:18064905-18068090 REVERSE LENGTH=1694
Length=1694

 Score =  122 bits (66),  Expect = 1e-27
 Identities = 79/85 (93%), Gaps = 2/85 (2%)
 Strand=Plus/Plus

Query  199  GGGTGGAGGCAGGTCTTTTGCTAGAGAGACCATTGGAAGAGTTGCTCCTG-AGCTTTGGC  257
            ||||||||| || ||||  ||||||||||||||||||||||||||||||| |||||||||
Sbjct  644  GGGTGGAGGAAGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGC  703

Query  258  -AAGAAAATTTTGAAGCAATTTGCA  281
             ||||||||||||||||||||||||
Sbjct  704  CAAGAAAATTTTGAAGCAATTTGCA  728


> AT1G59540.1 | Symbols: ZCF125 | P-loop containing nucleoside 
triphosphate hydrolases superfamily protein | chr1:21874064-21879539 
FORWARD LENGTH=2648
Length=2648

 Score =  119 bits (64),  Expect = 2e-26
 Identities = 80/87 (92%), Gaps = 4/87 (5%)
 Strand=Plus/Plus

Query  129  GAA-TTAATAGGCACTTTGGCGAGACAAACATGAATGTTCATAGTAGCAGATCTCACACC  187
            ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  560  GAAGTTAATAGGCACTTTGGCGAGACAAACATGAATGTTCATAGTAGCAGGTCTCACACC  619

Query  188  ATCTTCAGAATGG-G-TGGAG-GCAGG  211
            || |||||||||| | | ||| |||||
Sbjct  620  ATATTCAGAATGGTGATTGAGAGCAGG  646



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5